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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xnn:1 (3.6) BS01 CHL ? GO:0009765 ... P27490 28839073
    2 5xnn:1 (3.6) BS02 CLA ? GO:0009765 ... P27490 28839073
    3 5xnn:1 (3.6) BS03 CLA ? GO:0009765 ... P27490 28839073
    4 5xnn:1 (3.6) BS04 CLA ? GO:0009765 ... P27490 28839073
    5 5xnn:1 (3.6) BS05 CHL ? GO:0009765 ... P27490 28839073
    6 5xnn:1 (3.6) BS06 CHL ? GO:0009765 ... P27490 28839073
    7 5xnn:1 (3.6) BS07 CHL ? GO:0009765 ... P27490 28839073
    8 5xnn:1 (3.6) BS08 CHL ? GO:0009765 ... P27490 28839073
    9 5xnn:1 (3.6) BS09 CHL ? GO:0009765 ... P27490 28839073
    10 5xnn:1 (3.6) BS10 CLA ? GO:0009765 ... P27490 28839073
    11 5xnn:1 (3.6) BS11 CLA ? GO:0009765 ... P27490 28839073
    12 5xnn:1 (3.6) BS12 CLA ? GO:0009765 ... P27490 28839073
    13 5xnn:1 (3.6) BS13 CLA ? GO:0009765 ... P27490 28839073
    14 5xnn:1 (3.6) BS14 CLA ? GO:0009765 ... P27490 28839073
    15 5xnn:1 (3.6) BS15 CLA ? GO:0009765 ... P27490 28839073
    16 5xnn:1 (3.6) BS16 CHL ? GO:0009765 ... P27490 28839073
    17 5xnn:2 (3.6) BS01 CHL ? GO:0009765 ... P27490 28839073
    18 5xnn:2 (3.6) BS02 CLA ? GO:0009765 ... P27490 28839073
    19 5xnn:2 (3.6) BS03 CLA ? GO:0009765 ... P27490 28839073
    20 5xnn:2 (3.6) BS04 CLA ? GO:0009765 ... P27490 28839073
    21 5xnn:2 (3.6) BS05 CHL ? GO:0009765 ... P27490 28839073
    22 5xnn:2 (3.6) BS06 CHL ? GO:0009765 ... P27490 28839073
    23 5xnn:2 (3.6) BS07 CHL ? GO:0009765 ... P27490 28839073
    24 5xnn:2 (3.6) BS08 CHL ? GO:0009765 ... P27490 28839073
    25 5xnn:2 (3.6) BS09 CHL ? GO:0009765 ... P27490 28839073
    26 5xnn:2 (3.6) BS10 CLA ? GO:0009765 ... P27490 28839073
    27 5xnn:2 (3.6) BS11 CLA ? GO:0009765 ... P27490 28839073
    28 5xnn:2 (3.6) BS12 CLA ? GO:0009765 ... P27490 28839073
    29 5xnn:2 (3.6) BS13 CLA ? GO:0009765 ... P27490 28839073
    30 5xnn:2 (3.6) BS14 CLA ? GO:0009765 ... P27490 28839073
    31 5xnn:2 (3.6) BS15 CHL ? GO:0009765 ... P27490 28839073
    32 5xnn:2 (3.6) BS16 CHL ? GO:0009765 ... P27490 28839073
    33 5xnn:3 (3.6) BS01 CHL ? GO:0009416 ... Q04918 28839073
    34 5xnn:3 (3.6) BS02 CHL ? GO:0009416 ... Q04918 28839073
    35 5xnn:3 (3.6) BS03 CHL ? GO:0009416 ... Q04918 28839073
    36 5xnn:3 (3.6) BS04 CLA ? GO:0009416 ... Q04918 28839073
    37 5xnn:3 (3.6) BS05 CLA ? GO:0009416 ... Q04918 28839073
    38 5xnn:3 (3.6) BS06 CLA ? GO:0009416 ... Q04918 28839073
    39 5xnn:3 (3.6) BS07 CHL ? GO:0009416 ... Q04918 28839073
    40 5xnn:3 (3.6) BS08 CHL ? GO:0009416 ... Q04918 28839073
    41 5xnn:3 (3.6) BS09 CHL ? GO:0009416 ... Q04918 28839073
    42 5xnn:3 (3.6) BS10 CHL ? GO:0009416 ... Q04918 28839073
    43 5xnn:3 (3.6) BS11 CHL ? GO:0009416 ... Q04918 28839073
    44 5xnn:3 (3.6) BS12 CLA ? GO:0009416 ... Q04918 28839073
    45 5xnn:3 (3.6) BS13 CLA ? GO:0009416 ... Q04918 28839073
    46 5xnn:3 (3.6) BS14 CLA ? GO:0009416 ... Q04918 28839073
    47 5xnn:3 (3.6) BS15 CLA ? GO:0009416 ... Q04918 28839073
    48 5xnn:3 (3.6) BS16 CLA ? GO:0009416 ... Q04918 28839073
    49 5xnn:4 (3.6) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    50 5xnn:4 (3.6) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    51 5xnn:4 (3.6) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    52 5xnn:4 (3.6) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    53 5xnn:4 (3.6) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    54 5xnn:4 (3.6) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    55 5xnn:4 (3.6) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    56 5xnn:4 (3.6) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    57 5xnn:4 (3.6) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    58 5xnn:4 (3.6) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    59 5xnn:4 (3.6) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    60 5xnn:4 (3.6) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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