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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5xaf:A (2.551) BS01 GTP 3.6.5.- GO:0000226 ... P81947 29306206
    2 5xaf:A (2.551) BS02 CA 3.6.5.- GO:0000226 ... P81947 29306206
    3 5xaf:A (2.551) BS03 84F 3.6.5.- GO:0000226 ... P81947 29306206 PDBbind: -logKd/Ki=5.77, IC50=1.7uM
    4 5xaf:B (2.551) BS01 GDP ? GO:0000226 ... Q6B856 29306206
    5 5xaf:B (2.551) BS02 MG ? GO:0000226 ... Q6B856 29306206
    6 5xaf:B (2.551) BS03 84F ? GO:0000226 ... Q6B856 29306206 PDBbind: -logKd/Ki=5.77, IC50=1.7uM
    7 5xaf:C (2.551) BS01 GTP 3.6.5.- GO:0000226 ... P81947 29306206
    8 5xaf:C (2.551) BS02 84F 3.6.5.- GO:0000226 ... P81947 29306206
    9 5xaf:D (2.551) BS01 GDP ? GO:0000226 ... Q6B856 29306206
    10 5xaf:D (2.551) BS02 84F ? GO:0000226 ... Q6B856 29306206
    11 5xaf:F (2.551) BS01 MG N/A GO:0036211 ... N/A 29306206
    12 5xaf:F (2.551) BS02 ACP N/A GO:0036211 ... N/A 29306206
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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