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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5vyp:A (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    2 5vyp:B (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    3 5vyp:C (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    4 5vyp:C (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    5 5vyp:D (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    6 5vyp:D (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    7 5vyp:D (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    8 5vyp:E (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    9 5vyp:F (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    10 5vyp:G (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    11 5vyp:G (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    12 5vyp:H (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    13 5vyp:H (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    14 5vyp:H (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    15 5vyp:I (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    16 5vyp:I (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    17 5vyp:J (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    18 5vyp:J (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    19 5vyp:K (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    20 5vyp:L (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    21 5vyp:L (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    22 5vyp:M (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    23 5vyp:M (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    24 5vyp:N (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    25 5vyp:N (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    26 5vyp:O (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    27 5vyp:O (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    28 5vyp:P (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    29 5vyp:P (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    30 5vyp:Q (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    31 5vyp:Q (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    32 5vyp:Q (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    33 5vyp:R (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    34 5vyp:S (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    35 5vyp:S (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    36 5vyp:T (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    37 5vyp:T (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    38 5vyp:T (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    39 5vyp:U (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    40 5vyp:U (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    41 5vyp:U (2.6) BS03 PIO ? GO:0005773 ... C0HK49 28741756
    42 5vyp:V (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    43 5vyp:V (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    44 5vyp:W (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    45 5vyp:X (2.6) BS01 PIO ? GO:0005773 ... C0HK49 28741756
    46 5vyp:X (2.6) BS02 PIO ? GO:0005773 ... C0HK49 28741756
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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