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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5u4i:0 (3.5) BS01 rna ? GO:0000027 ... P0AG51 28077875
    2 5u4i:0 (3.5) BS02 rna ? GO:0000027 ... P0AG51 28077875
    3 5u4i:1 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 28077875
    4 5u4i:2 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 28077875
    5 5u4i:3 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 28077875
    6 5u4i:4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 28077875
    7 5u4i:5 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 28077875
    8 5u4i:5 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 28077875
    9 5u4i:C (3.5) BS01 rna ? GO:0000027 ... P60422 28077875
    10 5u4i:D (3.5) BS01 rna ? GO:0000027 ... P60438 28077875
    11 5u4i:E (3.5) BS01 rna ? GO:0001070 ... P60723 28077875
    12 5u4i:F (3.5) BS01 rna ? GO:0000027 ... P62399 28077875
    13 5u4i:F (3.5) BS02 rna ? GO:0000027 ... P62399 28077875
    14 5u4i:F (3.5) BS03 rna ? GO:0000027 ... P62399 28077875
    15 5u4i:G (3.5) BS01 rna ? GO:0000027 ... P0AG55 28077875
    16 5u4i:H (3.5) BS01 rna ? GO:0002181 ... P0A7R1 28077875
    17 5u4i:J (3.5) BS01 rna ? GO:0000027 ... P0A7J7 28077875
    18 5u4i:K (3.5) BS01 rna ? GO:0002181 ... P0AA10 28077875
    19 5u4i:L (3.5) BS01 rna ? GO:0002181 ... P0ADY3 28077875
    20 5u4i:L (3.5) BS02 rna ? GO:0002181 ... P0ADY3 28077875
    21 5u4i:M (3.5) BS01 rna ? GO:0002181 ... P02413 28077875
    22 5u4i:N (3.5) BS01 rna ? GO:0000027 ... P0ADY7 28077875
    23 5u4i:N (3.5) BS02 rna ? GO:0000027 ... P0ADY7 28077875
    24 5u4i:O (3.5) BS01 rna ? GO:0000027 ... P0AG44 28077875
    25 5u4i:P (3.5) BS01 rna ? GO:0002181 ... P0C018 28077875
    26 5u4i:P (3.5) BS02 rna ? GO:0002181 ... P0C018 28077875
    27 5u4i:Q (3.5) BS01 rna ? GO:0000027 ... P0A7K6 28077875
    28 5u4i:Q (3.5) BS02 rna ? GO:0000027 ... P0A7K6 28077875
    29 5u4i:R (3.5) BS01 rna ? GO:0000027 ... P0A7L3 28077875
    30 5u4i:S (3.5) BS01 rna ? GO:0002181 ... P0AG48 28077875
    31 5u4i:T (3.5) BS01 rna ? GO:0002181 ... P61175 28077875
    32 5u4i:U (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 28077875
    33 5u4i:V (3.5) BS01 rna ? GO:0000027 ... P60624 28077875
    34 5u4i:W (3.5) BS01 rna ? GO:0000027 ... P68919 28077875
    35 5u4i:W (3.5) BS02 rna ? GO:0000027 ... P68919 28077875
    36 5u4i:X (3.5) BS01 rna ? GO:0000027 ... P0A7L8 28077875
    37 5u4i:X (3.5) BS02 rna ? GO:0000027 ... P0A7L8 28077875
    38 5u4i:Y (3.5) BS01 rna ? GO:0000027 ... P0A7M2 28077875
    39 5u4i:Z (3.5) BS01 rna ? GO:0000027 ... P0A7M6 28077875
    40 5u4i:b (3.5) BS01 rna ? GO:0000028 ... P0A7V0 28077875
    41 5u4i:c (3.5) BS01 rna ? GO:0000028 ... P0A7V3 28077875
    42 5u4i:d (3.5) BS01 rna ? GO:0000028 ... P0A7V8 28077875
    43 5u4i:e (3.5) BS01 rna ? GO:0000028 ... P0A7W1 28077875
    44 5u4i:f (3.5) BS01 rna ? GO:0002181 ... P02358 28077875
    45 5u4i:g (3.5) BS01 rna ? GO:0000028 ... P02359 28077875
    46 5u4i:g (3.5) BS02 rna ? GO:0000028 ... P02359 28077875
    47 5u4i:h (3.5) BS01 rna ? GO:0000028 ... P0A7W7 28077875
    48 5u4i:i (3.5) BS01 rna ? GO:0000049 ... P0A7X3 28077875
    49 5u4i:i (3.5) BS02 rna ? GO:0000049 ... P0A7X3 28077875
    50 5u4i:j (3.5) BS01 rna ? GO:0000049 ... P0A7R5 28077875
    51 5u4i:k (3.5) BS01 rna ? GO:0002181 ... P0A7R9 28077875
    52 5u4i:l (3.5) BS01 rna ? GO:0000049 ... P0A7S3 28077875
    53 5u4i:m (3.5) BS01 rna ? GO:0000049 ... P0A7S9 28077875
    54 5u4i:m (3.5) BS02 rna ? GO:0000049 ... P0A7S9 28077875
    55 5u4i:n (3.5) BS01 rna ? GO:0000028 ... P0AG59 28077875
    56 5u4i:o (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 28077875
    57 5u4i:o (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 28077875
    58 5u4i:p (3.5) BS01 rna ? GO:0000028 ... P0A7T3 28077875
    59 5u4i:q (3.5) BS01 rna ? GO:0000028 ... P0AG63 28077875
    60 5u4i:r (3.5) BS01 rna ? GO:0002181 ... P0A7T7 28077875
    61 5u4i:s (3.5) BS01 rna ? GO:0003723 ... P0A7U3 28077875
    62 5u4i:t (3.5) BS01 rna ? GO:0000028 ... P0A7U7 28077875
    63 5u4i:u (3.5) BS01 rna ? GO:0000028 ... P68679 28077875
    64 5u4i:v (3.5) BS01 rna ? GO:0003747 ... P07012 28077875
    65 5u4i:v (3.5) BS02 rna ? GO:0003747 ... P07012 28077875
    66 5u4i:v (3.5) BS03 rna ? GO:0003747 ... P07012 28077875
    67 5u4i:w (3.5) BS01 rna ? GO:0072344 ... P36675 28077875
    68 5u4i:w (3.5) BS02 rna ? GO:0072344 ... P36675 28077875
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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