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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5tcu:L1 (3.9) BS01 rna ? GO:0003735 ... Q2FZ42 28487427
    2 5tcu:L1 (3.9) BS02 rna ? GO:0003735 ... Q2FZ42 28487427
    3 5tcu:L2 (3.9) BS01 rna ? GO:0002181 ... P60430 28487427
    4 5tcu:L3 (3.9) BS01 rna ? GO:0000027 ... Q2FXQ1 28487427
    5 5tcu:L4 (3.9) BS01 rna ? GO:0003723 ... Q2FXS8 28487427
    6 5tcu:L5 (3.9) BS01 rna ? GO:0003735 ... Q2FW11 28487427
    7 5tcu:L6 (3.9) BS01 rna ? GO:0000027 ... Q2FW08 28487427
    8 5tcu:L7 (3.9) BS01 rna ? GO:0003723 ... Q2FW17 28487427
    9 5tcu:L8 (3.9) BS01 rna ? GO:0003735 ... Q2G0S0 28487427
    10 5tcu:L9 (3.9) BS01 rna ? GO:0003735 ... Q2FXT0 28487427
    11 5tcu:L9 (3.9) BS02 rna ? GO:0003735 ... Q2FXT0 28487427
    12 5tcu:LA (3.9) BS01 rna ? GO:0003735 ... Q2FZ60 28487427
    13 5tcu:LB (3.9) BS01 rna ? GO:0003735 ... Q2FW14 28487427
    14 5tcu:LC (3.9) BS01 rna ? GO:0003735 ... Q2FW06 28487427
    15 5tcu:LD (3.9) BS01 rna ? GO:0003735 ... P0A0G2 28487427
    16 5tcu:LE (3.9) BS01 rna ? GO:0003735 ... A7X145 28487427
    17 5tcu:LF (3.9) BS01 rna ? GO:0003735 ... Q2FWD8 28487427
    18 5tcu:LG (3.9) BS01 rna ? GO:0003735 ... Q2FUQ0 28487427
    19 5tcu:LH (3.9) BS01 rna ? GO:0003735 ... Q2FXQ0 28487427
    20 5tcu:LI (3.9) BS01 rna ? GO:0003735 ... Q2FW29 28487427
    21 5tcu:LJ (3.9) BS01 rna ? GO:0003735 ... Q2FW07 28487427
    22 5tcu:LK (3.9) BS01 rna ? GO:0000049 ... Q2FW18 28487427
    23 5tcu:LK (3.9) BS02 rna ? GO:0000049 ... Q2FW18 28487427
    24 5tcu:LK (3.9) BS03 rna ? GO:0000049 ... Q2FW18 28487427
    25 5tcu:LL (3.9) BS01 rna ? GO:0002181 ... Q2FW21 28487427
    26 5tcu:LM (3.9) BS01 rna ? GO:0003729 ... Q2FW38 28487427
    27 5tcu:LN (3.9) BS01 rna ? GO:0003735 ... Q2FW16 28487427
    28 5tcu:LN (3.9) BS02 rna ? GO:0003735 ... Q2FW16 28487427
    29 5tcu:LO (3.9) BS01 rna ? GO:0003735 ... P0A0F8 28487427
    30 5tcu:LP (3.9) BS01 rna ? GO:0000049 ... Q2FW13 28487427
    31 5tcu:LP (3.9) BS02 rna ? GO:0000049 ... Q2FW13 28487427
    32 5tcu:LQ (3.9) BS01 rna ? GO:0003735 ... Q2FW33 28487427
    33 5tcu:LR (3.9) BS01 rna ? GO:0003735 ... Q2FW22 28487427
    34 5tcu:LR (3.9) BS02 rna ? GO:0003735 ... Q2FW22 28487427
    35 5tcu:LS (3.9) BS01 rna ? GO:0003735 ... Q2FYU6 28487427
    36 5tcu:S1 (3.9) BS01 rna ? GO:0003723 ... Q2YYP5 28487427
    37 5tcu:S2 (3.9) BS01 rna ? GO:0003735 ... Q2FW31 28487427
    38 5tcu:S3 (3.9) BS01 rna ? GO:0000049 ... P0A0H0 28487427
    39 5tcu:S4 (3.9) BS01 rna ? GO:0000049 ... Q2FW30 28487427
    40 5tcu:S5 (3.9) BS01 rna ? GO:0003735 ... Q2FW19 28487427
    41 5tcu:S6 (3.9) BS01 rna ? GO:0003735 ... Q2G2Q1 28487427
    42 5tcu:S6 (3.9) BS02 rna ? GO:0003735 ... Q2G2Q1 28487427
    43 5tcu:S7 (3.9) BS01 rna ? GO:0003735 ... Q2FZ45 28487427
    44 5tcu:S8 (3.9) BS01 rna ? GO:0003735 ... Q2FW15 28487427
    45 5tcu:S9 (3.9) BS01 rna ? GO:0003735 ... Q2G111 28487427
    46 5tcu:SA (3.9) BS01 rna ? GO:0003723 ... Q2FXY6 28487427
    47 5tcu:SB (3.9) BS01 rna ? GO:0003676 ... Q2FW12 28487427
    48 5tcu:SC (3.9) BS01 rna ? GO:0003723 ... Q2FXK6 28487427
    49 5tcu:SD (3.9) BS01 rna ? GO:0003723 ... Q2FW23 28487427
    50 5tcu:SE (3.9) BS01 rna ? GO:0003735 ... Q2G113 28487427
    51 5tcu:SF (3.9) BS01 rna ? GO:0003735 ... Q2FW20 28487427
    52 5tcu:SG (3.9) BS01 rna ? GO:0000028 ... P48940 28487427
    53 5tcu:SG (3.9) BS02 rna ? GO:0000028 ... P48940 28487427
    54 5tcu:SH (3.9) BS01 rna ? GO:0003723 ... Q2FW39 28487427
    55 5tcu:SI (3.9) BS01 rna ? GO:0003723 ... Q2FW10 28487427
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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