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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5t7v:L1 (3.6) BS01 rna ? GO:0003735 ... A0A077UVB6 28487427
    2 5t7v:L1 (3.6) BS02 rna ? GO:0003735 ... A0A077UVB6 28487427
    3 5t7v:L2 (3.6) BS01 rna ? GO:0002181 ... B3VKN3 28487427
    4 5t7v:L2 (3.6) BS02 rna ? GO:0002181 ... B3VKN3 28487427
    5 5t7v:L3 (3.6) BS01 rna ? GO:0000027 ... A0A077VMP6 28487427
    6 5t7v:L4 (3.6) BS01 rna ? GO:0003723 ... D7URR3 28487427
    7 5t7v:L5 (3.6) BS01 rna ? GO:0003735 ... A0A077UKF9 28487427
    8 5t7v:L6 (3.6) BS01 rna ? GO:0000027 ... W8TUB4 28487427
    9 5t7v:L7 (3.6) BS01 rna ? GO:0003723 ... W8TRD5 28487427
    10 5t7v:L8 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    11 5t7v:L9 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    12 5t7v:LA (3.6) BS01 rna ? GO:0003735 ... A0A077URJ8 28487427
    13 5t7v:LB (3.6) BS01 rna ? GO:0003735 ... A0A077W1J5 28487427
    14 5t7v:LC (3.6) BS01 rna ? GO:0003735 ... W8U3W0 28487427
    15 5t7v:LD (3.6) BS01 rna ? GO:0003735 ... W8UVN7 28487427
    16 5t7v:LD (3.6) BS02 rna ? GO:0003735 ... W8UVN7 28487427
    17 5t7v:LE (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    18 5t7v:LF (3.6) BS01 rna ? GO:0003735 ... A0A077UXT4 28487427
    19 5t7v:LG (3.6) BS01 rna ? GO:0003735 ... Q2YZB6 28487427
    20 5t7v:LH (3.6) BS01 rna ? GO:0003735 ... A0A077UL47 28487427
    21 5t7v:LI (3.6) BS01 rna ? GO:0003735 ... A0A077UGV8 28487427
    22 5t7v:LJ (3.6) BS01 rna ? GO:0003735 ... W8TRC7 28487427
    23 5t7v:LL (3.6) BS01 rna ? GO:0002181 ... A0A0U1MRH3 28487427
    24 5t7v:LM (3.6) BS01 rna ? GO:0003729 ... W8TUE6 28487427
    25 5t7v:LN (3.6) BS01 rna ? GO:0003735 ... A0A077UUA0 28487427
    26 5t7v:LN (3.6) BS02 rna ? GO:0003735 ... A0A077UUA0 28487427
    27 5t7v:LO (3.6) BS01 rna ? GO:0003735 ... A0A077UGA7 28487427
    28 5t7v:LP (3.6) BS01 rna ? GO:0000049 ... A0A077V4G0 28487427
    29 5t7v:LP (3.6) BS02 rna ? GO:0000049 ... A0A077V4G0 28487427
    30 5t7v:LQ (3.6) BS01 rna ? GO:0003735 ... A0A077UG91 28487427
    31 5t7v:LR (3.6) BS01 rna ? GO:0003735 ... W8TRE0 28487427
    32 5t7v:LR (3.6) BS02 rna ? GO:0003735 ... W8TRE0 28487427
    33 5t7v:S1 (3.6) BS01 rna ? GO:0003723 ... A0A0H2K0A0 28487427
    34 5t7v:S2 (3.6) BS01 rna ? GO:0003735 ... A0A077UKD6 28487427
    35 5t7v:S3 (3.6) BS01 rna ? GO:0000049 ... W8U1C6 28487427
    36 5t7v:S6 (3.6) BS01 rna ? GO:0003735 ... W8U6H8 28487427
    37 5t7v:S6 (3.6) BS02 rna ? GO:0003735 ... W8U6H8 28487427
    38 5t7v:S7 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    39 5t7v:S8 (3.6) BS01 rna ? GO:0003735 ... A0A077VLD5 28487427
    40 5t7v:S9 (3.6) BS01 rna N/A GO:0003735 ... N/A 28487427
    41 5t7v:SA (3.6) BS01 rna N/A GO:0003723 ... N/A 28487427
    42 5t7v:SC (3.6) BS01 rna ? GO:0003723 ... W8TVK2 28487427
    43 5t7v:SD (3.6) BS01 rna ? GO:0003723 ... W8TUC9 28487427
    44 5t7v:SE (3.6) BS01 rna ? GO:0003735 ... W8TPC6 28487427
    45 5t7v:SF (3.6) BS01 rna ? GO:0003735 ... W8U8T8 28487427
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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