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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o60:C (3.18) BS01 rna ? GO:0002181 ... A0QSD4 28683309
    2 5o60:C (3.18) BS02 MG ? GO:0002181 ... A0QSD4 28683309
    3 5o60:C (3.18) BS03 MG ? GO:0002181 ... A0QSD4 28683309
    4 5o60:D (3.18) BS01 rna ? GO:0003735 ... A0QSD1 28683309
    5 5o60:E (3.18) BS01 rna ? GO:0003735 ... A0QSD2 28683309
    6 5o60:E (3.18) BS02 MG ? GO:0003735 ... A0QSD2 28683309
    7 5o60:F (3.18) BS01 rna ? GO:0000049 ... A0QSG1 28683309
    8 5o60:F (3.18) BS02 rna ? GO:0000049 ... A0QSG1 28683309
    9 5o60:F (3.18) BS03 MG ? GO:0000049 ... A0QSG1 28683309
    10 5o60:G (3.18) BS01 rna ? GO:0002181 ... A0QSG4 28683309
    11 5o60:H (3.18) BS01 rna ? GO:0003735 ... A0R7F6 28683309
    12 5o60:I (3.18) BS01 rna ? GO:0003735 ... A0QS62 28683309
    13 5o60:J (3.18) BS01 rna ? GO:0003735 ... A0QS45 28683309
    14 5o60:K (3.18) BS01 rna ? GO:0003729 ... A0QSP8 28683309
    15 5o60:L (3.18) BS01 rna ? GO:0003735 ... A0QSF9 28683309
    16 5o60:M (3.18) BS01 rna ? GO:0003735 ... A0QSG8 28683309
    17 5o60:N (3.18) BS01 rna ? GO:0000049 ... A0QSD8 28683309
    18 5o60:N (3.18) BS02 MG ? GO:0000049 ... A0QSD8 28683309
    19 5o60:O (3.18) BS01 rna ? GO:0003735 ... A0QSL9 28683309
    20 5o60:P (3.18) BS01 rna ? GO:0003735 ... A0QSG5 28683309
    21 5o60:P (3.18) BS02 rna ? GO:0003735 ... A0QSG5 28683309
    22 5o60:Q (3.18) BS01 rna ? GO:0003735 ... A0QV42 28683309
    23 5o60:R (3.18) BS01 rna ? GO:0000027 ... A0QYU6 28683309
    24 5o60:S (3.18) BS01 rna ? GO:0003723 ... A0R151 28683309
    25 5o60:T (3.18) BS01 rna ? GO:0003735 ... A0QSD6 28683309
    26 5o60:U (3.18) BS01 rna ? GO:0000027 ... A0QSD3 28683309
    27 5o60:V (3.18) BS01 rna ? GO:0003723 ... A0QSG0 28683309
    28 5o60:W (3.18) BS01 rna ? GO:0003723 ... A0R3D2 28683309
    29 5o60:W (3.18) BS02 rna ? GO:0003723 ... A0R3D2 28683309
    30 5o60:X (3.18) BS01 rna ? GO:0003735 ... A0R150 28683309
    31 5o60:X (3.18) BS02 rna ? GO:0003735 ... A0R150 28683309
    32 5o60:Y (3.18) BS01 rna ? GO:0003735 ... A0QV03 28683309
    33 5o60:Y (3.18) BS02 ZN ? GO:0003735 ... A0QV03 28683309
    34 5o60:Z (3.18) BS01 rna ? GO:0003735 ... A0QSD9 28683309
    35 5o60:a (3.18) BS01 rna ? GO:0003735 ... A0QSG7 28683309
    36 5o60:a (3.18) BS02 rna ? GO:0003735 ... A0QSG7 28683309
    37 5o60:b (3.18) BS01 rna ? GO:0003735 ... A0R3I9 28683309
    38 5o60:c (3.18) BS01 rna ? GO:0003735 ... A0QS39 28683309
    39 5o60:c (3.18) BS02 ZN ? GO:0003735 ... A0QS39 28683309
    40 5o60:d (3.18) BS01 rna ? GO:0003735 ... A0R7K0 28683309
    41 5o60:e (3.18) BS01 rna ? GO:0003735 ... A0QYU7 28683309
    42 5o60:f (3.18) BS01 rna ? GO:0003735 ... A0QSL4 28683309
    43 5o60:g (3.18) BS01 rna ? GO:0003735 ... A0R215 28683309
    44 5o60:g (3.18) BS02 ZN ? GO:0003735 ... A0R215 28683309
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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