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BioLiP
Download all results in tab-seperated text for 24 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o5j:B (3.45) BS01 rna ? N/A A0QR10 28683309
    2 5o5j:C (3.45) BS01 rna ? GO:0003676 ... A0QSD7 28683309
    3 5o5j:D (3.45) BS01 rna ? GO:0003723 ... A0QSL7 28683309
    4 5o5j:E (3.45) BS01 rna ? GO:0003723 ... A0QSG6 28683309
    5 5o5j:F (3.45) BS01 rna N/A GO:0003735 ... N/A 28683309
    6 5o5j:G (3.45) BS01 rna ? GO:0000028 ... A0QS97 28683309
    7 5o5j:H (3.45) BS01 rna ? GO:0003735 ... A0QSG3 28683309
    8 5o5j:I (3.45) BS01 rna ? GO:0003723 ... A0QSP9 28683309
    9 5o5j:I (3.45) BS02 rna ? GO:0003723 ... A0QSP9 28683309
    10 5o5j:J (3.45) BS01 rna ? GO:0000049 ... A0QSD0 28683309
    11 5o5j:K (3.45) BS01 rna ? GO:0003735 ... A0QSL6 28683309
    12 5o5j:L (3.45) BS01 rna ? GO:0000049 ... A0QS96 28683309
    13 5o5j:M (3.45) BS01 rna ? GO:0000049 ... A0QSL5 28683309
    14 5o5j:N (3.45) BS01 rna ? GO:0003735 ... A0QSG2 28683309
    15 5o5j:N (3.45) BS02 ZN ? GO:0003735 ... A0QSG2 28683309
    16 5o5j:O (3.45) BS01 rna ? GO:0003735 ... A0QVQ3 28683309
    17 5o5j:P (3.45) BS01 rna ? GO:0003735 ... A0QV37 28683309
    18 5o5j:Q (3.45) BS01 rna ? GO:0003735 ... A0QSE0 28683309
    19 5o5j:R (3.45) BS01 rna ? GO:0003735 ... A0R7F7 28683309
    20 5o5j:R (3.45) BS02 ZN ? GO:0003735 ... A0R7F7 28683309
    21 5o5j:S (3.45) BS01 rna ? GO:0000028 ... A0QSD5 28683309
    22 5o5j:S (3.45) BS02 peptide ? GO:0000028 ... A0QSD5 28683309
    23 5o5j:T (3.45) BS01 rna ? GO:0003723 ... A0R102 28683309
    24 5o5j:V (3.45) BS01 rna ? GO:0003735 ... A0QVB8 28683309
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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