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BioLiP
Download all results in tab-seperated text for 23 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5no4:C (5.16) BS01 rna ? GO:0003676 ... P0A7V3 28482099
    2 5no4:D (5.16) BS01 rna ? GO:0000028 ... P0A7V8 28482099
    3 5no4:E (5.16) BS01 rna ? GO:0000028 ... P0A7W1 28482099
    4 5no4:F (5.16) BS01 rna ? GO:0003735 ... P02358 28482099
    5 5no4:G (5.16) BS01 rna ? GO:0003723 ... P02359 28482099
    6 5no4:H (5.16) BS01 rna ? GO:0000028 ... P0A7W7 28482099
    7 5no4:I (5.16) BS01 rna ? GO:0000049 ... P0A7X3 28482099
    8 5no4:J (5.16) BS01 rna ? GO:0000049 ... P0A7R5 28482099
    9 5no4:K (5.16) BS01 rna ? GO:0002181 ... P0A7R9 28482099
    10 5no4:M (5.16) BS01 rna ? GO:0000049 ... P0A7S9 28482099
    11 5no4:M (5.16) BS02 MG ? GO:0000049 ... P0A7S9 28482099
    12 5no4:N (5.16) BS01 rna ? GO:0000028 ... P0AG59 28482099
    13 5no4:O (5.16) BS01 rna ? GO:0000028 ... P0ADZ4 28482099
    14 5no4:P (5.16) BS01 rna ? GO:0000028 ... P0A7T3 28482099
    15 5no4:Q (5.16) BS01 rna ? GO:0000028 ... P0AG63 28482099
    16 5no4:Q (5.16) BS02 peptide ? GO:0000028 ... P0AG63 28482099
    17 5no4:R (5.16) BS01 rna ? GO:0003735 ... P0A7T7 28482099
    18 5no4:S (5.16) BS01 rna ? GO:0003723 ... P0A7U3 28482099
    19 5no4:T (5.16) BS01 rna ? GO:0000028 ... P0A7U7 28482099
    20 5no4:Z (5.16) BS01 rna 3.6.1.- GO:0003924 ... P39286 28482099
    21 5no4:Z (5.16) BS02 ZN 3.6.1.- GO:0003924 ... P39286 28482099
    22 5no4:Z (5.16) BS03 GNP 3.6.1.- GO:0003924 ... P39286 28482099
    23 5no4:Z (5.16) BS04 MG 3.6.1.- GO:0003924 ... P39286 28482099
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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