Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mlc:2 (3.6) BS01 rna ? GO:0003735 ... P28804 27986857
    2 5mlc:2 (3.6) BS02 rna ? GO:0003735 ... P28804 27986857
    3 5mlc:3 (3.6) BS01 rna ? GO:0003735 ... P28805 27986857
    4 5mlc:4 (3.6) BS01 rna ? GO:0003735 ... P82244 27986857
    5 5mlc:5 (3.6) BS01 rna ? GO:0003735 ... P23326 27986857
    6 5mlc:6 (3.6) BS01 rna ? GO:0003735 ... P12230 27986857
    7 5mlc:7 (3.6) BS01 rna ? GO:0005840 ... P27684 27986857
    8 5mlc:8 (3.6) BS01 rna ? GO:0003723 ... P82411 27986857
    9 5mlc:8 (3.6) BS02 rna ? GO:0003723 ... P82411 27986857
    10 5mlc:9 (3.6) BS01 rna ? GO:0006412 ... P82231 27986857
    11 5mlc:D (3.6) BS01 rna ? GO:0002181 ... P06509 27986857
    12 5mlc:E (3.6) BS01 rna ? GO:0003735 ... P82191 27986857
    13 5mlc:E (3.6) BS02 rna ? GO:0003735 ... P82191 27986857
    14 5mlc:F (3.6) BS01 rna ? GO:0003735 ... O49937 27986857
    15 5mlc:G (3.6) BS01 rna ? GO:0003735 ... P82192 27986857
    16 5mlc:G (3.6) BS02 rna ? GO:0003735 ... P82192 27986857
    17 5mlc:H (3.6) BS01 rna ? GO:0003735 ... P82193 27986857
    18 5mlc:I (3.6) BS01 rna ? GO:0003735 ... P82180 27986857
    19 5mlc:L (3.6) BS01 rna ? GO:0003729 ... P12629 27986857
    20 5mlc:L (3.6) BS02 rna ? GO:0003729 ... P12629 27986857
    21 5mlc:M (3.6) BS01 rna ? GO:0003735 ... P09596 27986857
    22 5mlc:N (3.6) BS01 rna ? GO:0003729 ... P22798 27986857
    23 5mlc:O (3.6) BS01 rna ? GO:0003735 ... P17353 27986857
    24 5mlc:O (3.6) BS02 rna ? GO:0003735 ... P17353 27986857
    25 5mlc:P (3.6) BS01 rna ? GO:0003735 ... P82194 27986857
    26 5mlc:P (3.6) BS02 rna ? GO:0003735 ... P82194 27986857
    27 5mlc:Q (3.6) BS01 rna ? GO:0003735 ... P82195 27986857
    28 5mlc:Q (3.6) BS02 rna ? GO:0003735 ... P82195 27986857
    29 5mlc:R (3.6) BS01 rna ? GO:0003735 ... P82413 27986857
    30 5mlc:R (3.6) BS02 rna ? GO:0003735 ... P82413 27986857
    31 5mlc:S (3.6) BS01 rna ? GO:0000027 ... P28803 27986857
    32 5mlc:T (3.6) BS01 rna ? GO:0003723 ... P24613 27986857
    33 5mlc:U (3.6) BS01 rna ? GO:0003735 ... P09594 27986857
    34 5mlc:V (3.6) BS01 rna ? GO:0000027 ... Q9LWB5 27986857
    35 5mlc:W (3.6) BS01 rna ? GO:0003723 ... P27683 27986857
    36 5mlc:X (3.6) BS01 rna ? GO:0003735 ... P82190 27986857
    37 5mlc:X (3.6) BS02 rna ? GO:0003735 ... P82190 27986857
    38 5mlc:Y (3.6) BS01 rna ? GO:0003735 ... P82245 27986857
    39 5mlc:Z (3.6) BS01 rna ? GO:0003735 ... P82248 27986857
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218