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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mfm:A (2.3) BS01 CA N/A N/A N/A 28864298
    2 5mfm:A (2.3) BS02 CA N/A N/A N/A 28864298
    3 5mfm:A (2.3) BS03 CA N/A N/A N/A 28864298
    4 5mfm:A (2.3) BS04 CA N/A N/A N/A 28864298
    5 5mfm:A (2.3) BS05 CA N/A N/A N/A 28864298
    6 5mfm:B (2.3) BS01 CA N/A N/A N/A 28864298
    7 5mfm:B (2.3) BS02 CA N/A N/A N/A 28864298
    8 5mfm:B (2.3) BS03 MG N/A N/A N/A 28864298
    9 5mfm:B (2.3) BS04 MG N/A N/A N/A 28864298
    10 5mfm:C (2.3) BS01 CA N/A N/A N/A 28864298
    11 5mfm:C (2.3) BS02 CA N/A N/A N/A 28864298
    12 5mfm:C (2.3) BS03 CA N/A N/A N/A 28864298
    13 5mfm:C (2.3) BS04 CA N/A N/A N/A 28864298
    14 5mfm:C (2.3) BS05 CA N/A N/A N/A 28864298
    15 5mfm:C (2.3) BS06 CA N/A N/A N/A 28864298
    16 5mfm:C (2.3) BS07 MG N/A N/A N/A 28864298
    17 5mfm:D (2.3) BS01 CA N/A N/A N/A 28864298
    18 5mfm:D (2.3) BS02 CA N/A N/A N/A 28864298
    19 5mfm:D (2.3) BS03 CA N/A N/A N/A 28864298
    20 5mfm:D (2.3) BS04 CA N/A N/A N/A 28864298
    21 5mfm:D (2.3) BS05 CA N/A N/A N/A 28864298
    22 5mfm:D (2.3) BS06 CA N/A N/A N/A 28864298
    23 5mfm:E (2.3) BS01 CA N/A N/A N/A 28864298
    24 5mfm:E (2.3) BS02 CA N/A N/A N/A 28864298
    25 5mfm:E (2.3) BS03 CA N/A N/A N/A 28864298
    26 5mfm:E (2.3) BS04 CA N/A N/A N/A 28864298
    27 5mfm:E (2.3) BS05 CA N/A N/A N/A 28864298
    28 5mfm:E (2.3) BS06 CA N/A N/A N/A 28864298
    29 5mfm:F (2.3) BS01 CA N/A N/A N/A 28864298
    30 5mfm:F (2.3) BS02 CA N/A N/A N/A 28864298
    31 5mfm:F (2.3) BS03 CA N/A N/A N/A 28864298
    32 5mfm:F (2.3) BS04 CA N/A N/A N/A 28864298
    33 5mfm:F (2.3) BS05 CA N/A N/A N/A 28864298
    34 5mfm:F (2.3) BS06 CA N/A N/A N/A 28864298
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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