Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 73 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5lzd:0 (3.4) BS01 rna ? GO:0000027 ... P0A7N4 27842381
    2 5lzd:1 (3.4) BS01 rna ? GO:0000027 ... P0A7N9 27842381
    3 5lzd:2 (3.4) BS01 rna ? GO:0002181 ... P0A7P5 27842381
    4 5lzd:3 (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 27842381
    5 5lzd:4 (3.4) BS01 rna ? GO:0002181 ... P0A7Q6 27842381
    6 5lzd:4 (3.4) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    7 5lzd:6 (3.4) BS01 rna ? GO:0002181 ... P0A7M9 27842381
    8 5lzd:6 (3.4) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    9 5lzd:C (3.4) BS01 rna ? GO:0000027 ... P60422 27842381
    10 5lzd:C (3.4) BS02 rna ? GO:0000027 ... P60422 27842381
    11 5lzd:D (3.4) BS01 rna ? GO:0000027 ... P60438 27842381
    12 5lzd:E (3.4) BS01 rna ? GO:0001070 ... P60723 27842381
    13 5lzd:F (3.4) BS01 rna ? GO:0000027 ... P62399 27842381
    14 5lzd:F (3.4) BS02 rna ? GO:0000027 ... P62399 27842381
    15 5lzd:F (3.4) BS03 rna ? GO:0000027 ... P62399 27842381
    16 5lzd:G (3.4) BS01 rna ? GO:0000027 ... P0AG55 27842381
    17 5lzd:H (3.4) BS01 rna ? GO:0002181 ... P0A7R1 27842381
    18 5lzd:I (3.4) BS01 rna ? GO:0000027 ... P0A7J7 27842381
    19 5lzd:J (3.4) BS01 rna ? GO:0002181 ... P0AA10 27842381
    20 5lzd:K (3.4) BS01 rna ? GO:0002181 ... P0ADY3 27842381
    21 5lzd:K (3.4) BS02 rna ? GO:0002181 ... P0ADY3 27842381
    22 5lzd:L (3.4) BS01 rna ? GO:0002181 ... P02413 27842381
    23 5lzd:M (3.4) BS01 rna ? GO:0000027 ... P0ADY7 27842381
    24 5lzd:M (3.4) BS02 rna ? GO:0000027 ... P0ADY7 27842381
    25 5lzd:N (3.4) BS01 rna ? GO:0000027 ... P0AG44 27842381
    26 5lzd:O (3.4) BS01 rna ? GO:0002181 ... P0C018 27842381
    27 5lzd:O (3.4) BS02 rna ? GO:0002181 ... P0C018 27842381
    28 5lzd:P (3.4) BS01 rna ? GO:0000027 ... P0A7K6 27842381
    29 5lzd:P (3.4) BS02 rna ? GO:0000027 ... P0A7K6 27842381
    30 5lzd:Q (3.4) BS01 rna ? GO:0000027 ... P0A7L3 27842381
    31 5lzd:R (3.4) BS01 rna ? GO:0002181 ... P0AG48 27842381
    32 5lzd:S (3.4) BS01 rna ? GO:0002181 ... P61175 27842381
    33 5lzd:T (3.4) BS01 rna ? GO:0000027 ... P0ADZ0 27842381
    34 5lzd:U (3.4) BS01 rna ? GO:0000027 ... P60624 27842381
    35 5lzd:V (3.4) BS01 rna ? GO:0000027 ... P68919 27842381
    36 5lzd:W (3.4) BS01 rna ? GO:0003735 ... P0A7L8 27842381
    37 5lzd:W (3.4) BS02 rna ? GO:0003735 ... P0A7L8 27842381
    38 5lzd:X (3.4) BS01 rna ? GO:0000027 ... P0A7M2 27842381
    39 5lzd:Y (3.4) BS01 rna ? GO:0000027 ... P0A7M6 27842381
    40 5lzd:Z (3.4) BS01 rna ? GO:0000027 ... P0AG51 27842381
    41 5lzd:Z (3.4) BS02 rna ? GO:0000027 ... P0AG51 27842381
    42 5lzd:b (3.4) BS01 rna ? GO:0000028 ... P0A7V0 27842381
    43 5lzd:c (3.4) BS01 rna ? GO:0003676 ... P0A7V3 27842381
    44 5lzd:c (3.4) BS02 rna ? GO:0003676 ... P0A7V3 27842381
    45 5lzd:d (3.4) BS01 rna ? GO:0000028 ... P0A7V8 27842381
    46 5lzd:d (3.4) BS02 rna ? GO:0000028 ... P0A7V8 27842381
    47 5lzd:e (3.4) BS01 rna ? GO:0000028 ... P0A7W1 27842381
    48 5lzd:e (3.4) BS02 rna ? GO:0000028 ... P0A7W1 27842381
    49 5lzd:f (3.4) BS01 rna ? GO:0003735 ... P02358 27842381
    50 5lzd:g (3.4) BS01 rna ? GO:0003723 ... P02359 27842381
    51 5lzd:h (3.4) BS01 rna ? GO:0000028 ... P0A7W7 27842381
    52 5lzd:i (3.4) BS01 rna ? GO:0000049 ... P0A7X3 27842381
    53 5lzd:i (3.4) BS02 rna ? GO:0000049 ... P0A7X3 27842381
    54 5lzd:j (3.4) BS01 rna ? GO:0000049 ... P0A7R5 27842381
    55 5lzd:k (3.4) BS01 rna ? GO:0002181 ... P0A7R9 27842381
    56 5lzd:l (3.4) BS01 rna ? GO:0000049 ... P0A7S3 27842381
    57 5lzd:m (3.4) BS01 rna ? GO:0000049 ... P0A7S9 27842381
    58 5lzd:m (3.4) BS02 rna ? GO:0000049 ... P0A7S9 27842381
    59 5lzd:n (3.4) BS01 rna ? GO:0000028 ... P0AG59 27842381
    60 5lzd:o (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 27842381
    61 5lzd:o (3.4) BS02 rna ? GO:0000028 ... P0ADZ4 27842381
    62 5lzd:p (3.4) BS01 rna ? GO:0000028 ... P0A7T3 27842381
    63 5lzd:q (3.4) BS01 rna ? GO:0000028 ... P0AG63 27842381
    64 5lzd:r (3.4) BS01 rna ? GO:0003735 ... P0A7T7 27842381
    65 5lzd:s (3.4) BS01 rna ? GO:0000028 ... P0A7U3 27842381
    66 5lzd:t (3.4) BS01 rna ? GO:0000028 ... P0A7U7 27842381
    67 5lzd:u (3.4) BS01 rna ? GO:0000028 ... P68679 27842381
    68 5lzd:z (3.4) BS01 rna ? GO:0000049 ... P14081 27842381
    69 5lzd:z (3.4) BS02 rna ? GO:0000049 ... P14081 27842381
    70 5lzd:z (3.4) BS03 rna ? GO:0000049 ... P14081 27842381
    71 5lzd:z (3.4) BS04 rna ? GO:0000049 ... P14081 27842381
    72 5lzd:z (3.4) BS05 SEC ? GO:0000049 ... P14081 27842381
    73 5lzd:z (3.4) BS06 GNP ? GO:0000049 ... P14081 27842381
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218