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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5luf:3 (9.1) BS01 ZN ? GO:0005740 ... P00428 27830641
    2 5luf:7 (9.1) BS01 peptide ? GO:0006123 ... P07470 27830641
    3 5luf:B (9.1) BS01 SF4 N/A N/A N/A 27830641
    4 5luf:E (9.1) BS01 FES N/A N/A N/A 27830641
    5 5luf:F (9.1) BS01 SF4 N/A N/A N/A 27830641
    6 5luf:G (9.1) BS01 SF4 N/A GO:0016020 ... N/A 27830641
    7 5luf:G (9.1) BS02 SF4 N/A GO:0016020 ... N/A 27830641
    8 5luf:G (9.1) BS03 FES N/A GO:0016020 ... N/A 27830641
    9 5luf:I (9.1) BS01 SF4 N/A N/A N/A 27830641
    10 5luf:I (9.1) BS02 SF4 N/A N/A N/A 27830641
    11 5luf:b (9.1) BS01 HEM ? GO:0005739 ... P00157 27830641
    12 5luf:b (9.1) BS02 HEM ? GO:0005739 ... P00157 27830641
    13 5luf:c (9.1) BS01 peptide ? GO:0005739 ... P31800 27830641
    14 5luf:d (9.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27830641
    15 5luf:j (9.1) BS01 peptide ? GO:0005739 ... P00130 27830641
    16 5luf:l (9.1) BS01 peptide ? GO:0005739 ... P31800 27830641
    17 5luf:o (9.1) BS01 HEM ? GO:0005739 ... P00157 27830641
    18 5luf:o (9.1) BS02 HEM ? GO:0005739 ... P00157 27830641
    19 5luf:p (9.1) BS01 HEC 7.1.1.8 GO:0009055 ... P00125 27830641
    20 5luf:q (9.1) BS01 FES 7.1.1.8 GO:0008121 ... P13272 27830641
    21 5luf:v (9.1) BS01 peptide ? GO:0005739 ... P00130 27830641
    22 5luf:x (9.1) BS01 CU 7.1.1.9 GO:0004129 ... P00396 27830641
    23 5luf:x (9.1) BS02 MG 7.1.1.9 GO:0004129 ... P00396 27830641
    24 5luf:x (9.1) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 27830641
    25 5luf:x (9.1) BS04 HEA 7.1.1.9 GO:0004129 ... P00396 27830641
    26 5luf:y (9.1) BS01 CU 7.1.1.9 GO:0004129 ... P68530 27830641
    27 5luf:y (9.1) BS02 CU 7.1.1.9 GO:0004129 ... P68530 27830641
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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