Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5kpw:1 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 27434674
    2 5kpw:10 (3.9) BS01 rna ? GO:0002181 ... P02358 27434674
    3 5kpw:11 (3.9) BS01 rna ? GO:0000028 ... P02359 27434674
    4 5kpw:11 (3.9) BS02 rna ? GO:0000028 ... P02359 27434674
    5 5kpw:11 (3.9) BS03 rna ? GO:0000028 ... P02359 27434674
    6 5kpw:12 (3.9) BS01 rna ? GO:0000028 ... P0A7W7 27434674
    7 5kpw:13 (3.9) BS01 rna ? GO:0000049 ... P0A7X3 27434674
    8 5kpw:14 (3.9) BS01 rna ? GO:0000049 ... P0A7R5 27434674
    9 5kpw:15 (3.9) BS01 rna ? GO:0002181 ... P0A7R9 27434674
    10 5kpw:16 (3.9) BS01 rna ? GO:0000049 ... P0A7S3 27434674
    11 5kpw:17 (3.9) BS01 rna ? GO:0000049 ... P0A7S9 27434674
    12 5kpw:17 (3.9) BS02 rna ? GO:0000049 ... P0A7S9 27434674
    13 5kpw:18 (3.9) BS01 rna ? GO:0000028 ... P0AG59 27434674
    14 5kpw:19 (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 27434674
    15 5kpw:19 (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 27434674
    16 5kpw:2 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 27434674
    17 5kpw:20 (3.9) BS01 rna ? GO:0000028 ... P0A7T3 27434674
    18 5kpw:21 (3.9) BS01 rna ? GO:0000028 ... P0AG63 27434674
    19 5kpw:22 (3.9) BS01 rna ? GO:0002181 ... P0A7T7 27434674
    20 5kpw:23 (3.9) BS01 rna ? GO:0000028 ... P0A7U3 27434674
    21 5kpw:24 (3.9) BS01 rna ? GO:0000028 ... P0A7U7 27434674
    22 5kpw:25 (3.9) BS01 rna ? GO:0000028 ... P68679 27434674
    23 5kpw:25 (3.9) BS02 rna ? GO:0000028 ... P68679 27434674
    24 5kpw:3 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 27434674
    25 5kpw:33 (3.9) BS01 rna 2.7.6.5 GO:0005515 ... P0AG20 27434674
    26 5kpw:33 (3.9) BS02 rna 2.7.6.5 GO:0005515 ... P0AG20 27434674
    27 5kpw:33 (3.9) BS03 rna 2.7.6.5 GO:0005515 ... P0AG20 27434674
    28 5kpw:4 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 27434674
    29 5kpw:5 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 27434674
    30 5kpw:6 (3.9) BS01 rna ? GO:0000028 ... P0A7V0 27434674
    31 5kpw:7 (3.9) BS01 rna ? GO:0000028 ... P0A7V3 27434674
    32 5kpw:8 (3.9) BS01 rna ? GO:0000028 ... P0A7V8 27434674
    33 5kpw:9 (3.9) BS01 rna ? GO:0000028 ... P0A7W1 27434674
    34 5kpw:A (3.9) BS01 rna ? GO:0000027 ... P60422 27434674
    35 5kpw:A (3.9) BS02 rna ? GO:0000027 ... P60422 27434674
    36 5kpw:B (3.9) BS01 rna ? GO:0000027 ... P60438 27434674
    37 5kpw:C (3.9) BS01 rna ? GO:0001070 ... P60723 27434674
    38 5kpw:D (3.9) BS01 rna ? GO:0000027 ... P62399 27434674
    39 5kpw:D (3.9) BS02 rna ? GO:0000027 ... P62399 27434674
    40 5kpw:D (3.9) BS03 rna ? GO:0000027 ... P62399 27434674
    41 5kpw:E (3.9) BS01 rna ? GO:0000027 ... P0AG55 27434674
    42 5kpw:F (3.9) BS01 rna ? GO:0002181 ... P0A7R1 27434674
    43 5kpw:G (3.9) BS01 rna ? GO:0002181 ... P0A7J3 27434674
    44 5kpw:H (3.9) BS01 rna ? GO:0000027 ... P0A7J7 27434674
    45 5kpw:I (3.9) BS01 rna ? GO:0002181 ... P0AA10 27434674
    46 5kpw:J (3.9) BS01 rna ? GO:0002181 ... P0ADY3 27434674
    47 5kpw:J (3.9) BS02 rna ? GO:0002181 ... P0ADY3 27434674
    48 5kpw:K (3.9) BS01 rna ? GO:0002181 ... P02413 27434674
    49 5kpw:L (3.9) BS01 rna ? GO:0000027 ... P0ADY7 27434674
    50 5kpw:L (3.9) BS02 rna ? GO:0000027 ... P0ADY7 27434674
    51 5kpw:M (3.9) BS01 rna ? GO:0000027 ... P0AG44 27434674
    52 5kpw:N (3.9) BS01 rna ? GO:0002181 ... P0C018 27434674
    53 5kpw:N (3.9) BS02 rna ? GO:0002181 ... P0C018 27434674
    54 5kpw:O (3.9) BS01 rna ? GO:0000027 ... P0A7K6 27434674
    55 5kpw:O (3.9) BS02 rna ? GO:0000027 ... P0A7K6 27434674
    56 5kpw:P (3.9) BS01 rna ? GO:0000027 ... P0A7L3 27434674
    57 5kpw:Q (3.9) BS01 rna ? GO:0002181 ... P0AG48 27434674
    58 5kpw:R (3.9) BS01 rna ? GO:0002181 ... P61175 27434674
    59 5kpw:S (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 27434674
    60 5kpw:T (3.9) BS01 rna ? GO:0000027 ... P60624 27434674
    61 5kpw:U (3.9) BS01 rna ? GO:0000027 ... P68919 27434674
    62 5kpw:V (3.9) BS01 rna ? GO:0000027 ... P0A7L8 27434674
    63 5kpw:V (3.9) BS02 rna ? GO:0000027 ... P0A7L8 27434674
    64 5kpw:W (3.9) BS01 rna ? GO:0000027 ... P0A7M2 27434674
    65 5kpw:X (3.9) BS01 rna ? GO:0000027 ... P0A7M6 27434674
    66 5kpw:Y (3.9) BS01 rna ? GO:0000027 ... P0AG51 27434674
    67 5kpw:Y (3.9) BS02 rna ? GO:0000027 ... P0AG51 27434674
    68 5kpw:Z (3.9) BS01 rna ? GO:0002181 ... P0A7M9 27434674
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218