Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 42 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5k0y:G (5.8) BS01 rna ? GO:0003735 ... G1TRM4 27373335
    2 5k0y:H (5.8) BS01 rna ? GO:0000462 ... G1SGX4 27373335
    3 5k0y:I (5.8) BS01 rna ? GO:0003723 ... G1TK17 27373335
    4 5k0y:J (5.8) BS01 rna ? GO:0003735 ... G1U7M4 27373335
    5 5k0y:K (5.8) BS01 rna ? GO:0003723 ... B7NZS8 27373335
    6 5k0y:L (5.8) BS01 rna ? GO:0003676 ... G1TPG3 27373335
    7 5k0y:O (5.8) BS01 rna ? GO:0003676 ... O75821 27373335
    8 5k0y:P (5.8) BS01 rna ? GO:0003676 ... G1T2G4 27373335
    9 5k0y:Q (5.8) BS01 rna ? GO:0003735 ... G1SZ47 27373335
    10 5k0y:R (5.8) BS01 rna ? GO:0000028 ... G1TN62 27373335
    11 5k0y:S (5.8) BS01 rna 3.6.5.3 GO:0000049 ... G1SRA8 27373335
    12 5k0y:S (5.8) BS02 peptide 3.6.5.3 GO:0000049 ... G1SRA8 27373335
    13 5k0y:T (5.8) BS01 rna ? GO:0001732 ... Q5IH81 27373335
    14 5k0y:U (5.8) BS01 rna ? GO:0003723 ... U3KMN4 27373335
    15 5k0y:U (5.8) BS02 rna ? GO:0003723 ... U3KMN4 27373335
    16 5k0y:V (5.8) BS01 rna ? GO:0003735 ... G1T8A2 27373335
    17 5k0y:V (5.8) BS02 rna ? GO:0003735 ... G1T8A2 27373335
    18 5k0y:W (5.8) BS01 rna ? N/A G1TDB3 27373335
    19 5k0y:X (5.8) BS01 rna ? GO:0003735 ... G1SVB0 27373335
    20 5k0y:Y (5.8) BS01 rna ? GO:0000028 ... G1TZ76 27373335
    21 5k0y:Z (5.8) BS01 rna ? GO:0003735 ... G1SP51 27373335
    22 5k0y:a (5.8) BS01 rna ? GO:0003735 ... G1TG89 27373335
    23 5k0y:c (5.8) BS01 rna N/A GO:0003723 ... N/A 27373335
    24 5k0y:c (5.8) BS02 rna N/A GO:0003723 ... N/A 27373335
    25 5k0y:e (5.8) BS01 rna ? GO:0003735 ... G1TU13 27373335
    26 5k0y:f (5.8) BS01 rna ? GO:0003735 ... G1TLT8 27373335
    27 5k0y:g (5.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 27373335
    28 5k0y:g (5.8) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 27373335
    29 5k0y:h (5.8) BS01 rna ? GO:0003723 ... G1SIZ2 27373335
    30 5k0y:i (5.8) BS01 rna ? GO:0003735 ... G1TN72 27373335
    31 5k0y:j (5.8) BS01 rna ? GO:0000028 ... G1T1F0 27373335
    32 5k0y:k (5.8) BS01 rna ? GO:0003735 ... G1TFE8 27373335
    33 5k0y:l (5.8) BS01 rna ? GO:0000028 ... G1TIB4 27373335
    34 5k0y:l (5.8) BS02 rna ? GO:0000028 ... G1TIB4 27373335
    35 5k0y:m (5.8) BS01 rna ? GO:0001891 ... G1SJB4 27373335
    36 5k0y:n (5.8) BS01 rna ? GO:0003723 ... G1U0Q2 27373335
    37 5k0y:o (5.8) BS01 rna ? GO:0000462 ... G1TJW1 27373335
    38 5k0y:p (5.8) BS01 rna ? GO:0003735 ... G1SK22 27373335
    39 5k0y:q (5.8) BS01 rna ? GO:0000082 ... G1TM55 27373335
    40 5k0y:r (5.8) BS01 rna ? GO:0003735 ... G1SFR8 27373335
    41 5k0y:s (5.8) BS01 rna ? GO:0003735 ... G1TS40 27373335
    42 5k0y:t (5.8) BS01 rna ? N/A G1T168 27373335
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218