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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5jcs:A (9.5) BS01 rna ? GO:0002181 ... P0CX45 26619264
    2 5jcs:B (9.5) BS01 rna ? GO:0000027 ... P14126 26619264
    3 5jcs:C (9.5) BS01 rna ? GO:0002181 ... P10664 26619264
    4 5jcs:C (9.5) BS02 rna ? GO:0002181 ... P10664 26619264
    5 5jcs:D (9.5) BS01 rna ? GO:0000027 ... P26321 26619264
    6 5jcs:D (9.5) BS02 rna ? GO:0000027 ... P26321 26619264
    7 5jcs:E (9.5) BS01 rna ? GO:0000027 ... Q02326 26619264
    8 5jcs:F (9.5) BS01 rna ? GO:0000463 ... P05737 26619264
    9 5jcs:G (9.5) BS01 rna ? GO:0000470 ... P17076 26619264
    10 5jcs:G (9.5) BS02 rna ? GO:0000470 ... P17076 26619264
    11 5jcs:H (9.5) BS01 rna ? GO:0002181 ... P05738 26619264
    12 5jcs:I (9.5) BS01 rna ? GO:0000055 ... P0CX43 26619264
    13 5jcs:J (9.5) BS01 rna ? GO:0000027 ... P0C0W9 26619264
    14 5jcs:J (9.5) BS02 rna ? GO:0000027 ... P0C0W9 26619264
    15 5jcs:K (9.5) BS01 rna ? GO:0000027 ... P0CX53 26619264
    16 5jcs:L (9.5) BS01 rna ? GO:0002181 ... Q12690 26619264
    17 5jcs:L (9.5) BS02 rna ? GO:0002181 ... Q12690 26619264
    18 5jcs:M (9.5) BS01 rna ? GO:0000027 ... P36105 26619264
    19 5jcs:N (9.5) BS01 rna ? GO:0002181 ... P05748 26619264
    20 5jcs:N (9.5) BS02 rna ? GO:0002181 ... P05748 26619264
    21 5jcs:O (9.5) BS01 rna ? GO:0000470 ... P26784 26619264
    22 5jcs:P (9.5) BS01 rna ? GO:0000448 ... P05740 26619264
    23 5jcs:P (9.5) BS02 rna ? GO:0000448 ... P05740 26619264
    24 5jcs:Q (9.5) BS01 rna ? GO:0002181 ... P0CX49 26619264
    25 5jcs:R (9.5) BS01 rna ? GO:0002181 ... P0CX82 26619264
    26 5jcs:S (9.5) BS01 rna ? GO:0002181 ... P0CX23 26619264
    27 5jcs:S (9.5) BS02 rna ? GO:0002181 ... P0CX23 26619264
    28 5jcs:T (9.5) BS01 rna ? GO:0002181 ... Q02753 26619264
    29 5jcs:V (9.5) BS01 rna ? GO:0002181 ... P0CX41 26619264
    30 5jcs:X (9.5) BS01 rna ? GO:0000027 ... P04456 26619264
    31 5jcs:X (9.5) BS02 rna ? GO:0000027 ... P04456 26619264
    32 5jcs:Y (9.5) BS01 rna ? GO:0002181 ... P05743 26619264
    33 5jcs:Y (9.5) BS02 rna ? GO:0002181 ... P05743 26619264
    34 5jcs:Z (9.5) BS01 rna ? GO:0002181 ... P0C2H6 26619264
    35 5jcs:a (9.5) BS01 rna ? GO:0002181 ... P02406 26619264
    36 5jcs:c (9.5) BS01 rna ? GO:0002181 ... P14120 26619264
    37 5jcs:d (9.5) BS01 rna ? GO:0002181 ... P0C2H8 26619264
    38 5jcs:e (9.5) BS01 rna ? GO:0002181 ... P38061 26619264
    39 5jcs:f (9.5) BS01 rna ? GO:0000027 ... P05744 26619264
    40 5jcs:g (9.5) BS01 rna ? GO:0002181 ... P87262 26619264
    41 5jcs:h (9.5) BS01 rna ? GO:0000463 ... P0CX84 26619264
    42 5jcs:h (9.5) BS02 rna ? GO:0000463 ... P0CX84 26619264
    43 5jcs:i (9.5) BS01 rna ? GO:0002181 ... P05745 26619264
    44 5jcs:j (9.5) BS01 rna ? GO:0000448 ... P49166 26619264
    45 5jcs:j (9.5) BS02 rna ? GO:0000448 ... P49166 26619264
    46 5jcs:k (9.5) BS01 rna ? GO:0002181 ... P49167 26619264
    47 5jcs:l (9.5) BS01 rna ? GO:0002181 ... P04650 26619264
    48 5jcs:l (9.5) BS02 rna ? GO:0002181 ... P04650 26619264
    49 5jcs:n (9.5) BS01 rna ? GO:0000027 ... P33201 26619264
    50 5jcs:o (9.5) BS01 rna ? GO:0000054 ... Q02892 26619264
    51 5jcs:p (9.5) BS01 rna ? GO:0002181 ... P0CX25 26619264
    52 5jcs:r (9.5) BS01 rna ? GO:0000055 ... P53313 26619264
    53 5jcs:s (9.5) BS01 rna ? GO:0000027 ... Q12019 26619264
    54 5jcs:u (9.5) BS01 rna 3.-.-.- GO:0000055 ... Q03862 26619264
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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