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BioLiP
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5hkv:2 (3.66) BS01 rna ? GO:0003735 ... Q2FUQ0 28973455
    2 5hkv:3 (3.66) BS01 rna ? GO:0003735 ... Q2FXQ0 28973455
    3 5hkv:A (3.66) BS01 rna ? GO:0002181 ... P60430 28973455
    4 5hkv:B (3.66) BS01 rna ? GO:0003735 ... Q2FW06 28973455
    5 5hkv:C (3.66) BS01 rna ? GO:0003735 ... Q2FW07 28973455
    6 5hkv:D (3.66) BS01 rna ? GO:0000049 ... Q2FW18 28973455
    7 5hkv:D (3.66) BS02 rna ? GO:0000049 ... Q2FW18 28973455
    8 5hkv:E (3.66) BS01 rna ? GO:0002181 ... Q2FW21 28973455
    9 5hkv:G (3.66) BS01 rna ? GO:0003729 ... Q2FW38 28973455
    10 5hkv:H (3.66) BS01 rna ? GO:0003735 ... Q2FW16 28973455
    11 5hkv:I (3.66) BS01 rna ? GO:0003735 ... P0A0F8 28973455
    12 5hkv:J (3.66) BS01 rna ? GO:0000049 ... Q2FW13 28973455
    13 5hkv:J (3.66) BS02 rna ? GO:0000049 ... Q2FW13 28973455
    14 5hkv:K (3.66) BS01 rna ? GO:0003735 ... Q2FW33 28973455
    15 5hkv:L (3.66) BS01 rna ? GO:0003735 ... Q2FW22 28973455
    16 5hkv:L (3.66) BS02 rna ? GO:0003735 ... Q2FW22 28973455
    17 5hkv:M (3.66) BS01 rna ? GO:0003735 ... Q2FZ42 28973455
    18 5hkv:N (3.66) BS01 rna ? GO:0000027 ... Q2FXQ1 28973455
    19 5hkv:O (3.66) BS01 rna ? GO:0003723 ... Q2FXS8 28973455
    20 5hkv:P (3.66) BS01 rna ? GO:0003735 ... Q2FW11 28973455
    21 5hkv:Q (3.66) BS01 rna ? GO:0000027 ... Q2FW08 28973455
    22 5hkv:R (3.66) BS01 rna ? GO:0003723 ... Q2FW17 28973455
    23 5hkv:S (3.66) BS01 rna ? GO:0003723 ... Q2G0S0 28973455
    24 5hkv:T (3.66) BS01 rna ? GO:0003735 ... Q2FXT0 28973455
    25 5hkv:U (3.66) BS01 rna ? GO:0003735 ... Q2FZ60 28973455
    26 5hkv:V (3.66) BS01 rna ? GO:0003735 ... Q2FW14 28973455
    27 5hkv:W (3.66) BS01 rna ? GO:0003735 ... P0A0G2 28973455
    28 5hkv:W (3.66) BS02 rna ? GO:0003735 ... P0A0G2 28973455
    29 5hkv:Z (3.66) BS01 rna ? GO:0003735 ... Q2FZF1 28973455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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