Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gm2:A (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    2 5gm2:A (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    3 5gm2:A (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    4 5gm2:A (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    5 5gm2:B (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    6 5gm2:B (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    7 5gm2:B (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    8 5gm2:B (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    9 5gm2:C (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    10 5gm2:C (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    11 5gm2:C (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    12 5gm2:C (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    13 5gm2:D (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    14 5gm2:D (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    15 5gm2:D (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    16 5gm2:D (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    17 5gm2:E (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    18 5gm2:E (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    19 5gm2:E (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    20 5gm2:E (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    21 5gm2:F (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    22 5gm2:F (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    23 5gm2:F (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    24 5gm2:F (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    25 5gm2:G (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    26 5gm2:G (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    27 5gm2:G (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    28 5gm2:G (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    29 5gm2:H (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    30 5gm2:H (2.8) BS02 SAH ? GO:0008168 ... A0A077K7L1 27613858
    31 5gm2:H (2.8) BS03 TEX ? GO:0008168 ... A0A077K7L1 27613858
    32 5gm2:I (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    33 5gm2:I (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    34 5gm2:I (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    35 5gm2:I (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    36 5gm2:J (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    37 5gm2:J (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    38 5gm2:J (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    39 5gm2:J (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    40 5gm2:K (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    41 5gm2:K (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    42 5gm2:K (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    43 5gm2:K (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    44 5gm2:L (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    45 5gm2:L (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    46 5gm2:L (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    47 5gm2:L (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    48 5gm2:M (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    49 5gm2:M (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    50 5gm2:M (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    51 5gm2:M (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    52 5gm2:N (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    53 5gm2:N (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    54 5gm2:N (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    55 5gm2:N (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    56 5gm2:O (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    57 5gm2:O (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    58 5gm2:O (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    59 5gm2:O (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    60 5gm2:P (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    61 5gm2:P (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    62 5gm2:P (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    63 5gm2:P (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    64 5gm2:Q (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    65 5gm2:Q (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    66 5gm2:Q (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    67 5gm2:Q (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    68 5gm2:R (2.8) BS01 SAH ? GO:0008168 ... A0A077K7L1 27613858
    69 5gm2:R (2.8) BS02 TEX ? GO:0008168 ... A0A077K7L1 27613858
    70 5gm2:R (2.8) BS03 SAH ? GO:0008168 ... A0A077K7L1 27613858
    71 5gm2:R (2.8) BS04 TEX ? GO:0008168 ... A0A077K7L1 27613858
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218