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BioLiP
Download all results in tab-seperated text for 48 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4zy0:A (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    PDBbind: -logKd/Ki=8.04, Ki=0.0091uM
    2 4zy0:A (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    3 4zy0:A (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    4 4zy0:A (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    5 4zy0:B (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    6 4zy0:B (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    7 4zy0:B (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    8 4zy0:B (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    9 4zy0:C (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    10 4zy0:C (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    11 4zy0:C (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    12 4zy0:C (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    13 4zy0:D (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    14 4zy0:D (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    15 4zy0:D (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    16 4zy0:D (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    17 4zy0:E (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    18 4zy0:E (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    19 4zy0:E (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    20 4zy0:E (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    21 4zy0:F (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    PDBbind: -logKd/Ki=8.04, Ki=0.0091uM
    22 4zy0:F (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    23 4zy0:F (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    24 4zy0:F (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    25 4zy0:G (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    26 4zy0:G (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    27 4zy0:G (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    28 4zy0:G (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    29 4zy0:H (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    30 4zy0:H (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    31 4zy0:H (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    32 4zy0:H (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    33 4zy0:I (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    34 4zy0:I (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    35 4zy0:I (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    36 4zy0:I (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    37 4zy0:J (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    38 4zy0:J (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    39 4zy0:J (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    40 4zy0:J (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    41 4zy0:K (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    42 4zy0:K (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    43 4zy0:K (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    44 4zy0:K (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    45 4zy0:L (2.2) BS01 4TM 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544 MOAD: Ki=0.0091uM
    46 4zy0:L (2.2) BS02 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    47 4zy0:L (2.2) BS03 ZN 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    48 4zy0:L (2.2) BS04 CO3 3.4.11.1 GO:0005737 ... A0A024V0B1 26807544
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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