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BioLiP
Download all results in tab-seperated text for 139 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9k:AB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    2 4v9k:AC (3.5) BS01 rna ? GO:0003676 ... P62663 23812722
    3 4v9k:AC (3.5) BS02 rna ? GO:0003676 ... P62663 23812722
    4 4v9k:AD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    5 4v9k:AE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    6 4v9k:AF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    7 4v9k:AG (3.5) BS01 rna ? GO:0000028 ... P62667 23812722
    8 4v9k:AH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    9 4v9k:AI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    10 4v9k:AI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    11 4v9k:AJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    12 4v9k:AK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    13 4v9k:AL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    14 4v9k:AM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    15 4v9k:AM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    16 4v9k:AN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    17 4v9k:AO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    18 4v9k:AO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    19 4v9k:AP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    20 4v9k:AQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    21 4v9k:AR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    22 4v9k:AS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    23 4v9k:AS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    24 4v9k:AT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    25 4v9k:AY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    26 4v9k:AY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    27 4v9k:AY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    28 4v9k:AY (3.5) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    29 4v9k:B0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    30 4v9k:B0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    31 4v9k:B1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    32 4v9k:B1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    33 4v9k:B2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    34 4v9k:B3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    35 4v9k:B3 (3.5) BS02 rna ? GO:0003735 ... Q72I22 23812722
    36 4v9k:B4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    37 4v9k:B5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    38 4v9k:B6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    39 4v9k:B7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    40 4v9k:B8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    41 4v9k:B9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    42 4v9k:BC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    43 4v9k:BC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    44 4v9k:BD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    45 4v9k:BD (3.5) BS02 rna ? GO:0002181 ... Q72I07 23812722
    46 4v9k:BE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    47 4v9k:BF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    48 4v9k:BG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    49 4v9k:BG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    50 4v9k:BH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    51 4v9k:BJ (3.5) BS01 rna N/A N/A N/A 23812722
    52 4v9k:BK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    53 4v9k:BN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    54 4v9k:BO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    55 4v9k:BO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    56 4v9k:BP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    57 4v9k:BQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    58 4v9k:BQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    59 4v9k:BR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    60 4v9k:BS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    61 4v9k:BS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    62 4v9k:BT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    63 4v9k:BT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    64 4v9k:BU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    65 4v9k:BV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    66 4v9k:BW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    67 4v9k:BX (3.5) BS01 rna ? GO:0000027 ... Q72I06 23812722
    68 4v9k:BY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    69 4v9k:BZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    70 4v9k:BZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    71 4v9k:CB (3.5) BS01 rna ? GO:0003735 ... P62662 23812722
    72 4v9k:CC (3.5) BS01 rna ? GO:0003676 ... P62663 23812722
    73 4v9k:CC (3.5) BS02 rna ? GO:0003676 ... P62663 23812722
    74 4v9k:CD (3.5) BS01 rna ? GO:0003723 ... P62664 23812722
    75 4v9k:CE (3.5) BS01 rna ? GO:0003723 ... P62665 23812722
    76 4v9k:CF (3.5) BS01 rna ? GO:0003735 ... P62666 23812722
    77 4v9k:CG (3.5) BS01 rna ? GO:0000028 ... P62667 23812722
    78 4v9k:CH (3.5) BS01 rna ? GO:0003735 ... P62668 23812722
    79 4v9k:CI (3.5) BS01 rna ? GO:0000049 ... P62669 23812722
    80 4v9k:CI (3.5) BS02 rna ? GO:0000049 ... P62669 23812722
    81 4v9k:CJ (3.5) BS01 rna ? GO:0000049 ... P62653 23812722
    82 4v9k:CK (3.5) BS01 rna ? GO:0003735 ... P62654 23812722
    83 4v9k:CK (3.5) BS02 rna ? GO:0003735 ... P62654 23812722
    84 4v9k:CL (3.5) BS01 rna ? GO:0000049 ... P61941 23812722
    85 4v9k:CM (3.5) BS01 rna ? GO:0000049 ... P62655 23812722
    86 4v9k:CM (3.5) BS02 rna ? GO:0000049 ... P62655 23812722
    87 4v9k:CN (3.5) BS01 rna ? GO:0003735 ... P62656 23812722
    88 4v9k:CO (3.5) BS01 rna ? GO:0003735 ... P62657 23812722
    89 4v9k:CO (3.5) BS02 rna ? GO:0003735 ... P62657 23812722
    90 4v9k:CP (3.5) BS01 rna ? GO:0003735 ... P62238 23812722
    91 4v9k:CQ (3.5) BS01 rna ? GO:0003735 ... P62658 23812722
    92 4v9k:CR (3.5) BS01 rna ? GO:0003735 ... P62659 23812722
    93 4v9k:CS (3.5) BS01 rna ? GO:0003723 ... P62660 23812722
    94 4v9k:CS (3.5) BS02 rna ? GO:0003723 ... P62660 23812722
    95 4v9k:CT (3.5) BS01 rna ? GO:0003723 ... P62661 23812722
    96 4v9k:CY (3.5) BS01 rna ? GO:0003746 ... Q5SHN5 23812722
    97 4v9k:CY (3.5) BS02 rna ? GO:0003746 ... Q5SHN5 23812722
    98 4v9k:CY (3.5) BS03 GNP ? GO:0003746 ... Q5SHN5 23812722
    99 4v9k:CY (3.5) BS04 MG ? GO:0003746 ... Q5SHN5 23812722
    100 4v9k:D0 (3.5) BS01 rna ? GO:0003735 ... Q72HR3 23812722
    101 4v9k:D0 (3.5) BS02 rna ? GO:0003735 ... Q72HR3 23812722
    102 4v9k:D1 (3.5) BS01 rna ? GO:0003735 ... Q72G84 23812722
    103 4v9k:D1 (3.5) BS02 rna ? GO:0003735 ... Q72G84 23812722
    104 4v9k:D2 (3.5) BS01 rna ? GO:0003735 ... Q72I12 23812722
    105 4v9k:D3 (3.5) BS01 rna ? GO:0003735 ... Q72I22 23812722
    106 4v9k:D4 (3.5) BS01 rna ? GO:0003735 ... Q72JR0 23812722
    107 4v9k:D5 (3.5) BS01 rna ? GO:0003735 ... P62652 23812722
    108 4v9k:D6 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 23812722
    109 4v9k:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 23812722
    110 4v9k:D8 (3.5) BS01 rna ? GO:0003735 ... Q72L77 23812722
    111 4v9k:D9 (3.5) BS01 rna ? GO:0003735 ... Q72I28 23812722
    112 4v9k:DC (3.5) BS01 rna ? GO:0000049 ... Q72GV9 23812722
    113 4v9k:DC (3.5) BS02 rna ? GO:0000049 ... Q72GV9 23812722
    114 4v9k:DD (3.5) BS01 rna ? GO:0002181 ... Q72I07 23812722
    115 4v9k:DE (3.5) BS01 rna ? GO:0003735 ... Q72I04 23812722
    116 4v9k:DF (3.5) BS01 rna ? GO:0003735 ... Q72I05 23812722
    117 4v9k:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 23812722
    118 4v9k:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 23812722
    119 4v9k:DH (3.5) BS01 rna ? GO:0002181 ... Q72I19 23812722
    120 4v9k:DJ (3.5) BS01 rna N/A N/A N/A 23812722
    121 4v9k:DK (3.5) BS01 rna ? GO:0003735 ... P62442 23812722
    122 4v9k:DN (3.5) BS01 rna ? GO:0003729 ... Q72IN1 23812722
    123 4v9k:DO (3.5) BS01 rna ? GO:0003735 ... Q72I14 23812722
    124 4v9k:DO (3.5) BS02 rna ? GO:0003735 ... Q72I14 23812722
    125 4v9k:DP (3.5) BS01 rna ? GO:0003735 ... Q72I23 23812722
    126 4v9k:DQ (3.5) BS01 rna ? GO:0000049 ... Q72I11 23812722
    127 4v9k:DQ (3.5) BS02 rna ? GO:0000049 ... Q72I11 23812722
    128 4v9k:DR (3.5) BS01 rna ? GO:0003735 ... Q72I33 23812722
    129 4v9k:DS (3.5) BS01 rna ? GO:0003735 ... Q72I20 23812722
    130 4v9k:DS (3.5) BS02 rna ? GO:0003735 ... Q72I20 23812722
    131 4v9k:DT (3.5) BS01 rna ? GO:0003735 ... Q72JU9 23812722
    132 4v9k:DT (3.5) BS02 rna ? GO:0003735 ... Q72JU9 23812722
    133 4v9k:DU (3.5) BS01 rna ? GO:0000027 ... Q72L76 23812722
    134 4v9k:DV (3.5) BS01 rna ? GO:0003723 ... Q72HR2 23812722
    135 4v9k:DW (3.5) BS01 rna ? GO:0003735 ... Q72I09 23812722
    136 4v9k:DX (3.5) BS01 rna ? GO:0000027 ... Q72I06 23812722
    137 4v9k:DY (3.5) BS01 rna ? GO:0003723 ... Q72I15 23812722
    138 4v9k:DZ (3.5) BS01 rna ? GO:0003723 ... Q72IA7 23812722
    139 4v9k:DZ (3.5) BS02 rna ? GO:0003723 ... Q72IA7 23812722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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