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BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v8d:AE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    2 4v8d:AF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    3 4v8d:AG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    4 4v8d:AG (3.0) BS02 MG ? GO:0003723 ... P80373 22437501
    5 4v8d:AG (3.0) BS03 ZN ? GO:0003723 ... P80373 22437501
    6 4v8d:AH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    7 4v8d:AH (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    8 4v8d:AI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    9 4v8d:AJ (3.0) BS01 rna ? GO:0000028 ... P17291 22437501
    10 4v8d:AJ (3.0) BS02 rna ? GO:0000028 ... P17291 22437501
    11 4v8d:AK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    12 4v8d:AL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    13 4v8d:AL (3.0) BS02 rna ? GO:0000049 ... P80374 22437501
    14 4v8d:AM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    15 4v8d:AN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    16 4v8d:AN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    17 4v8d:AO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    18 4v8d:AO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    19 4v8d:AP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    20 4v8d:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    21 4v8d:AQ (3.0) BS02 ZN N/A GO:0003735 ... N/A 22437501
    22 4v8d:AR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    23 4v8d:AR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    24 4v8d:AS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    25 4v8d:AT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    26 4v8d:AU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    27 4v8d:AV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    28 4v8d:AW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    29 4v8d:B0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    30 4v8d:B1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    31 4v8d:B2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    32 4v8d:B3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    33 4v8d:B3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    34 4v8d:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    35 4v8d:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    36 4v8d:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    37 4v8d:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    38 4v8d:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    39 4v8d:BD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    40 4v8d:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    41 4v8d:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    42 4v8d:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    43 4v8d:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    44 4v8d:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    45 4v8d:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    46 4v8d:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    47 4v8d:BK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    48 4v8d:BM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    49 4v8d:BN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    50 4v8d:BN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    51 4v8d:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    52 4v8d:BO (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 22437501
    53 4v8d:BP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    54 4v8d:BP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    55 4v8d:BP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    56 4v8d:BQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    57 4v8d:BQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    58 4v8d:BR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    59 4v8d:BR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    60 4v8d:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    61 4v8d:BT (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    62 4v8d:BU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    63 4v8d:BV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    64 4v8d:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    65 4v8d:BX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    66 4v8d:BX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    67 4v8d:BZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    68 4v8d:CE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    69 4v8d:CF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    70 4v8d:CG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    71 4v8d:CG (3.0) BS02 MG ? GO:0003723 ... P80373 22437501
    72 4v8d:CG (3.0) BS03 ZN ? GO:0003723 ... P80373 22437501
    73 4v8d:CH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    74 4v8d:CH (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    75 4v8d:CI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    76 4v8d:CJ (3.0) BS01 rna ? GO:0000028 ... P17291 22437501
    77 4v8d:CJ (3.0) BS02 rna ? GO:0000028 ... P17291 22437501
    78 4v8d:CK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    79 4v8d:CL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    80 4v8d:CL (3.0) BS02 rna ? GO:0000049 ... P80374 22437501
    81 4v8d:CM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    82 4v8d:CN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    83 4v8d:CN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    84 4v8d:CO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    85 4v8d:CO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    86 4v8d:CP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    87 4v8d:CP (3.0) BS02 rna ? GO:0000049 ... P80377 22437501
    88 4v8d:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    89 4v8d:CR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    90 4v8d:CR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    91 4v8d:CS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    92 4v8d:CT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    93 4v8d:CU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    94 4v8d:CV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    95 4v8d:CW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    96 4v8d:D0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    97 4v8d:D1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    98 4v8d:D2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    99 4v8d:D3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    100 4v8d:D3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    101 4v8d:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    102 4v8d:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    103 4v8d:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    104 4v8d:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    105 4v8d:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    106 4v8d:DD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    107 4v8d:DD (3.0) BS02 MG ? GO:0002181 ... P60405 22437501
    108 4v8d:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    109 4v8d:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    110 4v8d:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    111 4v8d:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    112 4v8d:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    113 4v8d:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    114 4v8d:DK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    115 4v8d:DK (3.0) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    116 4v8d:DM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    117 4v8d:DN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    118 4v8d:DN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    119 4v8d:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    120 4v8d:DP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    121 4v8d:DP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    122 4v8d:DP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    123 4v8d:DQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    124 4v8d:DQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    125 4v8d:DR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    126 4v8d:DR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    127 4v8d:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    128 4v8d:DT (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    129 4v8d:DU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    130 4v8d:DV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    131 4v8d:DV (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    132 4v8d:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    133 4v8d:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    134 4v8d:DX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    135 4v8d:DZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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