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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7a:AB (9.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    2 4v7a:AC (9.0) BS01 rna ? GO:0003676 ... P0A7V3 24186064
    3 4v7a:AD (9.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    4 4v7a:AE (9.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    5 4v7a:AF (9.0) BS01 rna ? GO:0003735 ... P02358 24186064
    6 4v7a:AG (9.0) BS01 rna ? GO:0003723 ... P02359 24186064
    7 4v7a:AG (9.0) BS02 rna ? GO:0003723 ... P02359 24186064
    8 4v7a:AH (9.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    9 4v7a:AI (9.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    10 4v7a:AI (9.0) BS02 rna ? GO:0000049 ... P0A7X3 24186064
    11 4v7a:AJ (9.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    12 4v7a:AK (9.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    13 4v7a:AL (9.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    14 4v7a:AM (9.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    15 4v7a:AN (9.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    16 4v7a:AO (9.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    17 4v7a:AO (9.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    18 4v7a:AP (9.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    19 4v7a:AQ (9.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    20 4v7a:AR (9.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    21 4v7a:AS (9.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    22 4v7a:AT (9.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    23 4v7a:AU (9.0) BS01 rna ? GO:0003735 ... P68679 24186064
    24 4v7a:B0 (9.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    25 4v7a:B1 (9.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    26 4v7a:B2 (9.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    27 4v7a:B3 (9.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    28 4v7a:B4 (9.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    29 4v7a:B5 (9.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    30 4v7a:BC (9.0) BS01 rna ? GO:0000027 ... P60422 24186064
    31 4v7a:BD (9.0) BS01 rna ? GO:0000027 ... P60438 24186064
    32 4v7a:BE (9.0) BS01 rna ? GO:0001070 ... P60723 24186064
    33 4v7a:BF (9.0) BS01 rna ? GO:0000027 ... P62399 24186064
    34 4v7a:BF (9.0) BS02 rna ? GO:0000027 ... P62399 24186064
    35 4v7a:BF (9.0) BS03 rna ? GO:0000027 ... P62399 24186064
    36 4v7a:BG (9.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    37 4v7a:BH (9.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    38 4v7a:BI (9.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    39 4v7a:BJ (9.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    40 4v7a:BK (9.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    41 4v7a:BK (9.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    42 4v7a:BL (9.0) BS01 rna ? GO:0002181 ... P02413 24186064
    43 4v7a:BM (9.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    44 4v7a:BM (9.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    45 4v7a:BN (9.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    46 4v7a:BO (9.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    47 4v7a:BO (9.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    48 4v7a:BP (9.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    49 4v7a:BP (9.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    50 4v7a:BQ (9.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    51 4v7a:BR (9.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    52 4v7a:BS (9.0) BS01 rna ? GO:0002181 ... P61175 24186064
    53 4v7a:BT (9.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    54 4v7a:BU (9.0) BS01 rna ? GO:0000027 ... P60624 24186064
    55 4v7a:BV (9.0) BS01 rna ? GO:0000027 ... P68919 24186064
    56 4v7a:BW (9.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    57 4v7a:BW (9.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    58 4v7a:BX (9.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    59 4v7a:BY (9.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    60 4v7a:BZ (9.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    61 4v7a:BZ (9.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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