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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v6k:AC (8.25) BS01 rna ? GO:0000027 ... P0A7L0 21378755
    2 4v6k:AD (8.25) BS01 rna ? GO:0000027 ... P60422 21378755
    3 4v6k:AE (8.25) BS01 rna ? GO:0000027 ... P60438 21378755
    4 4v6k:AF (8.25) BS01 rna ? GO:0001070 ... P60723 21378755
    5 4v6k:AG (8.25) BS01 rna ? GO:0000027 ... P62399 21378755
    6 4v6k:AG (8.25) BS02 rna ? GO:0000027 ... P62399 21378755
    7 4v6k:AH (8.25) BS01 rna ? GO:0000027 ... P0AG55 21378755
    8 4v6k:AI (8.25) BS01 rna ? GO:0002181 ... P0A7R1 21378755
    9 4v6k:AJ (8.25) BS01 rna ? GO:0000027 ... P0A7J7 21378755
    10 4v6k:AK (8.25) BS01 rna ? GO:0002181 ... P0AA10 21378755
    11 4v6k:AL (8.25) BS01 rna ? GO:0002181 ... P0ADY3 21378755
    12 4v6k:AL (8.25) BS02 rna ? GO:0002181 ... P0ADY3 21378755
    13 4v6k:AM (8.25) BS01 rna ? GO:0002181 ... P02413 21378755
    14 4v6k:AN (8.25) BS01 rna ? GO:0000027 ... P0ADY7 21378755
    15 4v6k:AN (8.25) BS02 rna ? GO:0000027 ... P0ADY7 21378755
    16 4v6k:AO (8.25) BS01 rna ? GO:0000027 ... P0AG44 21378755
    17 4v6k:AP (8.25) BS01 rna ? GO:0002181 ... P0C018 21378755
    18 4v6k:AP (8.25) BS02 rna ? GO:0002181 ... P0C018 21378755
    19 4v6k:AQ (8.25) BS01 rna ? GO:0000027 ... P0A7K6 21378755
    20 4v6k:AQ (8.25) BS02 rna ? GO:0000027 ... P0A7K6 21378755
    21 4v6k:AR (8.25) BS01 rna ? GO:0000027 ... P0A7L3 21378755
    22 4v6k:AS (8.25) BS01 rna ? GO:0002181 ... P0AG48 21378755
    23 4v6k:AT (8.25) BS01 rna ? GO:0002181 ... P61175 21378755
    24 4v6k:AU (8.25) BS01 rna ? GO:0000027 ... P0ADZ0 21378755
    25 4v6k:AV (8.25) BS01 rna ? GO:0000027 ... P60624 21378755
    26 4v6k:AW (8.25) BS01 rna ? GO:0000027 ... P68919 21378755
    27 4v6k:AW (8.25) BS02 rna ? GO:0000027 ... P68919 21378755
    28 4v6k:AX (8.25) BS01 rna ? GO:0000027 ... P0A7L8 21378755
    29 4v6k:AX (8.25) BS02 rna ? GO:0000027 ... P0A7L8 21378755
    30 4v6k:AY (8.25) BS01 rna ? GO:0000027 ... P0A7M2 21378755
    31 4v6k:AZ (8.25) BS01 rna ? GO:0000027 ... P0A7M6 21378755
    32 4v6k:Aa (8.25) BS01 rna ? GO:0000027 ... P0AG51 21378755
    33 4v6k:Ab (8.25) BS01 rna ? GO:0002181 ... P0A7M9 21378755
    34 4v6k:Ab (8.25) BS02 rna ? GO:0002181 ... P0A7M9 21378755
    35 4v6k:Ac (8.25) BS01 rna ? GO:0000027 ... P0A7N4 21378755
    36 4v6k:Ad (8.25) BS01 rna ? GO:0000027 ... P0A7N9 21378755
    37 4v6k:Ae (8.25) BS01 rna ? GO:0002181 ... P0A7P5 21378755
    38 4v6k:Af (8.25) BS01 rna ? GO:0002181 ... P0A7Q1 21378755
    39 4v6k:Ag (8.25) BS01 rna N/A GO:0003735 ... N/A 21378755
    40 4v6k:BC (8.25) BS01 rna ? GO:0003723 ... P0CE48 21378755
    41 4v6k:BC (8.25) BS02 rna ? GO:0003723 ... P0CE48 21378755
    42 4v6k:BC (8.25) BS03 rna ? GO:0003723 ... P0CE48 21378755
    43 4v6k:BF (8.25) BS01 rna ? GO:0000028 ... P0A7V0 21378755
    44 4v6k:BG (8.25) BS01 rna ? GO:0000028 ... P0A7V3 21378755
    45 4v6k:BG (8.25) BS02 rna ? GO:0000028 ... P0A7V3 21378755
    46 4v6k:BH (8.25) BS01 rna ? GO:0000028 ... P0A7V8 21378755
    47 4v6k:BI (8.25) BS01 rna ? GO:0000028 ... P0A7W1 21378755
    48 4v6k:BI (8.25) BS02 rna ? GO:0000028 ... P0A7W1 21378755
    49 4v6k:BJ (8.25) BS01 rna ? GO:0002181 ... P02358 21378755
    50 4v6k:BK (8.25) BS01 rna ? GO:0000028 ... P02359 21378755
    51 4v6k:BK (8.25) BS02 rna ? GO:0000028 ... P02359 21378755
    52 4v6k:BL (8.25) BS01 rna ? GO:0000028 ... P0A7W7 21378755
    53 4v6k:BM (8.25) BS01 rna ? GO:0000049 ... P0A7X3 21378755
    54 4v6k:BN (8.25) BS01 rna ? GO:0000049 ... P0A7R5 21378755
    55 4v6k:BO (8.25) BS01 rna ? GO:0002181 ... P0A7R9 21378755
    56 4v6k:BO (8.25) BS02 rna ? GO:0002181 ... P0A7R9 21378755
    57 4v6k:BP (8.25) BS01 rna ? GO:0000049 ... P0A7S3 21378755
    58 4v6k:BP (8.25) BS02 rna ? GO:0000049 ... P0A7S3 21378755
    59 4v6k:BQ (8.25) BS01 rna ? GO:0000049 ... P0A7S9 21378755
    60 4v6k:BQ (8.25) BS02 rna ? GO:0000049 ... P0A7S9 21378755
    61 4v6k:BR (8.25) BS01 rna ? GO:0000028 ... P0AG59 21378755
    62 4v6k:BS (8.25) BS01 rna ? GO:0003735 ... Q8X9M2 21378755
    63 4v6k:BS (8.25) BS02 rna ? GO:0003735 ... Q8X9M2 21378755
    64 4v6k:BT (8.25) BS01 rna ? GO:0000028 ... P0A7T3 21378755
    65 4v6k:BU (8.25) BS01 rna ? GO:0000028 ... P0AG63 21378755
    66 4v6k:BV (8.25) BS01 rna ? GO:0002181 ... P0A7T7 21378755
    67 4v6k:BW (8.25) BS01 rna ? GO:0000028 ... P0A7U3 21378755
    68 4v6k:BW (8.25) BS02 rna ? GO:0000028 ... P0A7U3 21378755
    69 4v6k:BX (8.25) BS01 rna ? GO:0000028 ... P0A7U7 21378755
    70 4v6k:BY (8.25) BS01 rna ? GO:0000028 ... P68679 21378755
    71 4v6k:BY (8.25) BS02 rna ? GO:0000028 ... P68679 21378755
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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