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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5z:Aa (8.7) BS01 rna N/A GO:0043022 ... N/A 18400176
    2 4v5z:Ac (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    3 4v5z:Ae (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    4 4v5z:Ag (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    5 4v5z:Ah (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    6 4v5z:Ai (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    7 4v5z:Ak (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    8 4v5z:Al (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    9 4v5z:Am (8.7) BS01 rna N/A GO:0003676 ... N/A 18400176
    10 4v5z:An (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    11 4v5z:An (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    12 4v5z:Ao (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    13 4v5z:Aq (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    14 4v5z:As (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    15 4v5z:As (8.7) BS02 rna N/A GO:0003723 ... N/A 18400176
    16 4v5z:B2 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    17 4v5z:B3 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    18 4v5z:B3 (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    19 4v5z:B4 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    20 4v5z:B4 (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    21 4v5z:B5 (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    22 4v5z:B6 (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    23 4v5z:B9 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    24 4v5z:Ba (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    25 4v5z:Bb (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    26 4v5z:Bc (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    27 4v5z:Bd (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    28 4v5z:Bd (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    29 4v5z:Be (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    30 4v5z:Bf (8.7) BS01 rna N/A GO:0042254 ... N/A 18400176
    31 4v5z:Bh (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    32 4v5z:Bi (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    33 4v5z:Bj (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    34 4v5z:Bk (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    35 4v5z:Bk (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    36 4v5z:Bl (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    37 4v5z:Bl (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    38 4v5z:Bl (8.7) BS03 rna N/A GO:0003735 ... N/A 18400176
    39 4v5z:Bm (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    40 4v5z:Bn (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    41 4v5z:Bn (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    42 4v5z:Bn (8.7) BS03 rna N/A GO:0003735 ... N/A 18400176
    43 4v5z:Bo (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    44 4v5z:Bo (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    45 4v5z:Bp (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    46 4v5z:Bp (8.7) BS02 rna N/A GO:0003723 ... N/A 18400176
    47 4v5z:Bp (8.7) BS03 rna N/A GO:0003723 ... N/A 18400176
    48 4v5z:Bp (8.7) BS04 peptide N/A GO:0003723 ... N/A 18400176
    49 4v5z:Bq (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    50 4v5z:Br (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    51 4v5z:Bs (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    52 4v5z:Bv (8.7) BS01 rna N/A GO:0000463 ... N/A 18400176
    53 4v5z:Bv (8.7) BS02 peptide N/A GO:0000463 ... N/A 18400176
    54 4v5z:Bw (8.7) BS01 rna N/A GO:0000463 ... N/A 18400176
    55 4v5z:Bx (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    56 4v5z:By (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    57 4v5z:Bz (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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