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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5o:A1 (3.93) BS01 rna ? GO:0000028 ... Q234G5 21205638
    2 4v5o:A2 (3.93) BS01 rna ? GO:0000462 ... Q22AV0 21205638
    3 4v5o:A3 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    4 4v5o:A4 (3.93) BS01 rna ? GO:0003735 ... Q23DE3 21205638
    5 4v5o:A4 (3.93) BS02 rna ? GO:0003735 ... Q23DE3 21205638
    6 4v5o:A5 (3.93) BS01 rna ? GO:0003729 ... E6PBU4 21205638
    7 4v5o:A5 (3.93) BS02 ZN ? GO:0003729 ... E6PBU4 21205638
    8 4v5o:A6 (3.93) BS01 rna ? GO:0000028 ... Q22CK0 21205638
    9 4v5o:A6 (3.93) BS02 ZN ? GO:0000028 ... Q22CK0 21205638
    10 4v5o:A7 (3.93) BS01 rna ? GO:0003723 ... Q24F70 21205638
    11 4v5o:A8 (3.93) BS01 rna N/A N/A N/A 21205638
    12 4v5o:A9 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    13 4v5o:A9 (3.93) BS02 ZN N/A GO:0003735 ... N/A 21205638
    14 4v5o:AB (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    15 4v5o:AC (3.93) BS01 rna ? GO:0003723 ... Q22AV9 21205638
    16 4v5o:AD (3.93) BS01 rna ? GO:0003723 ... Q230V2 21205638
    17 4v5o:AE (3.93) BS01 rna ? GO:0003723 ... Q23KG1 21205638
    18 4v5o:AF (3.93) BS01 rna N/A GO:0003743 ... N/A 21205638
    19 4v5o:AG (3.93) BS01 rna ? GO:0000028 ... Q22WU7 21205638
    20 4v5o:AH (3.93) BS01 rna ? GO:0003735 ... Q238Q8 21205638
    21 4v5o:AI (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    22 4v5o:AJ (3.93) BS01 rna ? GO:0003735 ... Q22DC6 21205638
    23 4v5o:AK (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    24 4v5o:AL (3.93) BS01 rna ? GO:0003735 ... P06147 21205638
    25 4v5o:AM (3.93) BS01 rna N/A GO:0003676 ... N/A 21205638
    26 4v5o:AM (3.93) BS02 rna N/A GO:0003676 ... N/A 21205638
    27 4v5o:AN (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    28 4v5o:AN (3.93) BS02 ZN ? GO:0003735 ... Q22MB0 21205638
    29 4v5o:AO (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    30 4v5o:AP (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    31 4v5o:AQ (3.93) BS01 rna ? GO:0003735 ... Q22B78 21205638
    32 4v5o:AR (3.93) BS01 rna ? GO:0001934 ... Q24D42 21205638
    33 4v5o:AS (3.93) BS01 rna N/A GO:0003723 ... N/A 21205638
    34 4v5o:AT (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    35 4v5o:AU (3.93) BS01 rna ? GO:0003735 ... Q22W26 21205638
    36 4v5o:AV (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    37 4v5o:AW (3.93) BS01 rna ? GO:0003723 ... P0C233 21205638
    38 4v5o:AX (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    39 4v5o:AY (3.93) BS01 rna ? GO:0003735 ... A4VD76 21205638
    40 4v5o:AZ (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    41 4v5o:B1 (3.93) BS01 rna ? GO:0000028 ... Q234G5 21205638
    42 4v5o:B2 (3.93) BS01 rna ? GO:0000462 ... Q22AV0 21205638
    43 4v5o:B3 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    44 4v5o:B4 (3.93) BS01 rna ? GO:0003735 ... Q23DE3 21205638
    45 4v5o:B4 (3.93) BS02 rna ? GO:0003735 ... Q23DE3 21205638
    46 4v5o:B5 (3.93) BS01 rna ? GO:0003729 ... E6PBU4 21205638
    47 4v5o:B5 (3.93) BS02 ZN ? GO:0003729 ... E6PBU4 21205638
    48 4v5o:B6 (3.93) BS01 rna ? GO:0000028 ... Q22CK0 21205638
    49 4v5o:B6 (3.93) BS02 ZN ? GO:0000028 ... Q22CK0 21205638
    50 4v5o:B7 (3.93) BS01 rna ? GO:0003723 ... Q24F70 21205638
    51 4v5o:B8 (3.93) BS01 rna N/A N/A N/A 21205638
    52 4v5o:B9 (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    53 4v5o:B9 (3.93) BS02 ZN N/A GO:0003735 ... N/A 21205638
    54 4v5o:BB (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    55 4v5o:BC (3.93) BS01 rna ? GO:0003723 ... Q22AV9 21205638
    56 4v5o:BD (3.93) BS01 rna ? GO:0003723 ... Q230V2 21205638
    57 4v5o:BE (3.93) BS01 rna ? GO:0003723 ... Q23KG1 21205638
    58 4v5o:BF (3.93) BS01 rna N/A GO:0003743 ... N/A 21205638
    59 4v5o:BG (3.93) BS01 rna ? GO:0000028 ... Q22WU7 21205638
    60 4v5o:BH (3.93) BS01 rna ? GO:0003735 ... Q238Q8 21205638
    61 4v5o:BI (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    62 4v5o:BJ (3.93) BS01 rna ? GO:0003735 ... Q22DC6 21205638
    63 4v5o:BK (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    64 4v5o:BL (3.93) BS01 rna ? GO:0003735 ... P06147 21205638
    65 4v5o:BM (3.93) BS01 rna N/A GO:0003676 ... N/A 21205638
    66 4v5o:BN (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    67 4v5o:BN (3.93) BS02 ZN ? GO:0003735 ... Q22MB0 21205638
    68 4v5o:BO (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    69 4v5o:BP (3.93) BS01 rna ? GO:0003735 ... Q22MB0 21205638
    70 4v5o:BQ (3.93) BS01 rna ? GO:0003735 ... Q22B78 21205638
    71 4v5o:BR (3.93) BS01 rna ? GO:0001934 ... Q24D42 21205638
    72 4v5o:BS (3.93) BS01 rna N/A GO:0003723 ... N/A 21205638
    73 4v5o:BT (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    74 4v5o:BU (3.93) BS01 rna ? GO:0003735 ... Q22W26 21205638
    75 4v5o:BV (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    76 4v5o:BW (3.93) BS01 rna ? GO:0003723 ... P0C233 21205638
    77 4v5o:BX (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    78 4v5o:BY (3.93) BS01 rna ? GO:0003735 ... A4VD76 21205638
    79 4v5o:BZ (3.93) BS01 rna N/A GO:0003735 ... N/A 21205638
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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