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BioLiP
Download all results in tab-seperated text for 147 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v5e:AB (3.45) BS01 rna ? GO:0003735 ... P80371 18988853
    2 4v5e:AC (3.45) BS01 rna ? GO:0003676 ... P80372 18988853
    3 4v5e:AD (3.45) BS01 rna ? GO:0003723 ... P80373 18988853
    4 4v5e:AD (3.45) BS02 ZN ? GO:0003723 ... P80373 18988853
    5 4v5e:AE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 18988853
    6 4v5e:AF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 18988853
    7 4v5e:AG (3.45) BS01 rna ? GO:0000028 ... P17291 18988853
    8 4v5e:AG (3.45) BS02 rna ? GO:0000028 ... P17291 18988853
    9 4v5e:AH (3.45) BS01 rna ? GO:0003735 ... P0DOY9 18988853
    10 4v5e:AI (3.45) BS01 rna ? GO:0000049 ... P80374 18988853
    11 4v5e:AI (3.45) BS02 rna ? GO:0000049 ... P80374 18988853
    12 4v5e:AJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 18988853
    13 4v5e:AK (3.45) BS01 rna ? GO:0003735 ... P80376 18988853
    14 4v5e:AL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 18988853
    15 4v5e:AM (3.45) BS01 rna ? GO:0000049 ... P80377 18988853
    16 4v5e:AN (3.45) BS01 rna ? GO:0003735 ... P0DOY6 18988853
    17 4v5e:AN (3.45) BS02 ZN ? GO:0003735 ... P0DOY6 18988853
    18 4v5e:AO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 18988853
    19 4v5e:AO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 18988853
    20 4v5e:AP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 18988853
    21 4v5e:AQ (3.45) BS01 rna ? GO:0003735 ... P0DOY7 18988853
    22 4v5e:AR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 18988853
    23 4v5e:AS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 18988853
    24 4v5e:AT (3.45) BS01 rna ? GO:0003723 ... P80380 18988853
    25 4v5e:AY (3.45) BS01 rna ? GO:0000049 ... Q5SM01 18988853
    26 4v5e:AY (3.45) BS02 rna ? GO:0000049 ... Q5SM01 18988853
    27 4v5e:AY (3.45) BS03 rna ? GO:0000049 ... Q5SM01 18988853
    28 4v5e:AY (3.45) BS04 rna ? GO:0000049 ... Q5SM01 18988853
    29 4v5e:B0 (3.45) BS01 rna ? GO:0003735 ... P60493 18988853
    30 4v5e:B0 (3.45) BS02 rna ? GO:0003735 ... P60493 18988853
    31 4v5e:B1 (3.45) BS01 rna ? GO:0003735 ... P60494 18988853
    32 4v5e:B2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 18988853
    33 4v5e:B3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 18988853
    34 4v5e:B3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 18988853
    35 4v5e:B5 (3.45) BS01 rna ? GO:0003735 ... P80339 18988853
    36 4v5e:B6 (3.45) BS01 rna ? GO:0000049 ... P35871 18988853
    37 4v5e:B7 (3.45) BS01 rna ? GO:0003735 ... P80340 18988853
    38 4v5e:B8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 18988853
    39 4v5e:B9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 18988853
    40 4v5e:B9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 18988853
    41 4v5e:BC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 18988853
    42 4v5e:BC (3.45) BS02 rna ? GO:0000049 ... Q5SLP7 18988853
    43 4v5e:BD (3.45) BS01 rna ? GO:0002181 ... P60405 18988853
    44 4v5e:BD (3.45) BS02 MG ? GO:0002181 ... P60405 18988853
    45 4v5e:BD (3.45) BS03 MG ? GO:0002181 ... P60405 18988853
    46 4v5e:BE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 18988853
    47 4v5e:BF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 18988853
    48 4v5e:BG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 18988853
    49 4v5e:BG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 18988853
    50 4v5e:BG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 18988853
    51 4v5e:BH (3.45) BS01 rna ? GO:0002181 ... P0DOY8 18988853
    52 4v5e:BI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 18988853
    53 4v5e:BJ (3.45) BS01 rna N/A N/A N/A 18988853
    54 4v5e:BK (3.45) BS01 rna ? GO:0003735 ... Q5SLP6 18988853
    55 4v5e:BN (3.45) BS01 rna ? GO:0003729 ... P60488 18988853
    56 4v5e:BO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 18988853
    57 4v5e:BP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 18988853
    58 4v5e:BP (3.45) BS02 MG ? GO:0003735 ... Q5SHQ7 18988853
    59 4v5e:BQ (3.45) BS01 rna ? GO:0000049 ... P60489 18988853
    60 4v5e:BQ (3.45) BS02 rna ? GO:0000049 ... P60489 18988853
    61 4v5e:BR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 18988853
    62 4v5e:BS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 18988853
    63 4v5e:BS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 18988853
    64 4v5e:BT (3.45) BS01 rna ? GO:0003735 ... P60490 18988853
    65 4v5e:BT (3.45) BS02 rna ? GO:0003735 ... P60490 18988853
    66 4v5e:BU (3.45) BS01 rna ? GO:0000027 ... P60491 18988853
    67 4v5e:BV (3.45) BS01 rna ? GO:0003723 ... P60492 18988853
    68 4v5e:BW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 18988853
    69 4v5e:BX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 18988853
    70 4v5e:BY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 18988853
    71 4v5e:BZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 18988853
    72 4v5e:BZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 18988853
    73 4v5e:CB (3.45) BS01 rna ? GO:0003735 ... P80371 18988853
    74 4v5e:CC (3.45) BS01 rna ? GO:0003676 ... P80372 18988853
    75 4v5e:CD (3.45) BS01 rna ? GO:0003723 ... P80373 18988853
    76 4v5e:CD (3.45) BS02 ZN ? GO:0003723 ... P80373 18988853
    77 4v5e:CE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 18988853
    78 4v5e:CF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 18988853
    79 4v5e:CG (3.45) BS01 rna ? GO:0000028 ... P17291 18988853
    80 4v5e:CG (3.45) BS02 rna ? GO:0000028 ... P17291 18988853
    81 4v5e:CH (3.45) BS01 rna ? GO:0003735 ... P0DOY9 18988853
    82 4v5e:CI (3.45) BS01 rna ? GO:0000049 ... P80374 18988853
    83 4v5e:CI (3.45) BS02 rna ? GO:0000049 ... P80374 18988853
    84 4v5e:CJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 18988853
    85 4v5e:CK (3.45) BS01 rna ? GO:0003735 ... P80376 18988853
    86 4v5e:CL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 18988853
    87 4v5e:CL (3.45) BS02 MG ? GO:0000049 ... Q5SHN3 18988853
    88 4v5e:CM (3.45) BS01 rna ? GO:0000049 ... P80377 18988853
    89 4v5e:CM (3.45) BS02 rna ? GO:0000049 ... P80377 18988853
    90 4v5e:CN (3.45) BS01 rna ? GO:0003735 ... P0DOY6 18988853
    91 4v5e:CN (3.45) BS02 MG ? GO:0003735 ... P0DOY6 18988853
    92 4v5e:CN (3.45) BS03 ZN ? GO:0003735 ... P0DOY6 18988853
    93 4v5e:CO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 18988853
    94 4v5e:CO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 18988853
    95 4v5e:CP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 18988853
    96 4v5e:CQ (3.45) BS01 rna ? GO:0003735 ... P0DOY7 18988853
    97 4v5e:CR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 18988853
    98 4v5e:CS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 18988853
    99 4v5e:CT (3.45) BS01 rna ? GO:0003723 ... P80380 18988853
    100 4v5e:CY (3.45) BS01 rna ? GO:0000049 ... Q5SM01 18988853
    101 4v5e:CY (3.45) BS02 rna ? GO:0000049 ... Q5SM01 18988853
    102 4v5e:CY (3.45) BS03 rna ? GO:0000049 ... Q5SM01 18988853
    103 4v5e:CY (3.45) BS04 rna ? GO:0000049 ... Q5SM01 18988853
    104 4v5e:D0 (3.45) BS01 rna ? GO:0003735 ... P60493 18988853
    105 4v5e:D0 (3.45) BS02 rna ? GO:0003735 ... P60493 18988853
    106 4v5e:D1 (3.45) BS01 rna ? GO:0003735 ... P60494 18988853
    107 4v5e:D2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 18988853
    108 4v5e:D3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 18988853
    109 4v5e:D5 (3.45) BS01 rna ? GO:0003735 ... P80339 18988853
    110 4v5e:D6 (3.45) BS01 rna ? GO:0000049 ... P35871 18988853
    111 4v5e:D7 (3.45) BS01 rna ? GO:0003735 ... P80340 18988853
    112 4v5e:D8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 18988853
    113 4v5e:D9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 18988853
    114 4v5e:D9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 18988853
    115 4v5e:DC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 18988853
    116 4v5e:DD (3.45) BS01 rna ? GO:0002181 ... P60405 18988853
    117 4v5e:DD (3.45) BS02 MG ? GO:0002181 ... P60405 18988853
    118 4v5e:DE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 18988853
    119 4v5e:DF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 18988853
    120 4v5e:DG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 18988853
    121 4v5e:DG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 18988853
    122 4v5e:DG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 18988853
    123 4v5e:DH (3.45) BS01 rna ? GO:0002181 ... P0DOY8 18988853
    124 4v5e:DH (3.45) BS02 MG ? GO:0002181 ... P0DOY8 18988853
    125 4v5e:DI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 18988853
    126 4v5e:DI (3.45) BS02 rna ? GO:0003735 ... Q5SLQ1 18988853
    127 4v5e:DJ (3.45) BS01 rna N/A N/A N/A 18988853
    128 4v5e:DK (3.45) BS01 rna ? GO:0003735 ... Q5SLP6 18988853
    129 4v5e:DN (3.45) BS01 rna ? GO:0003729 ... P60488 18988853
    130 4v5e:DO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 18988853
    131 4v5e:DO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 18988853
    132 4v5e:DP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 18988853
    133 4v5e:DQ (3.45) BS01 rna ? GO:0000049 ... P60489 18988853
    134 4v5e:DQ (3.45) BS02 rna ? GO:0000049 ... P60489 18988853
    135 4v5e:DR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 18988853
    136 4v5e:DR (3.45) BS02 MG ? GO:0003735 ... Q9Z9H5 18988853
    137 4v5e:DS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 18988853
    138 4v5e:DS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 18988853
    139 4v5e:DT (3.45) BS01 rna ? GO:0003735 ... P60490 18988853
    140 4v5e:DT (3.45) BS02 rna ? GO:0003735 ... P60490 18988853
    141 4v5e:DU (3.45) BS01 rna ? GO:0000027 ... P60491 18988853
    142 4v5e:DV (3.45) BS01 rna ? GO:0003723 ... P60492 18988853
    143 4v5e:DW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 18988853
    144 4v5e:DX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 18988853
    145 4v5e:DY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 18988853
    146 4v5e:DZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 18988853
    147 4v5e:DZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 18988853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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