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BioLiP
Download all results in tab-seperated text for 298 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4v4g:GT (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    202 4v4g:Ga (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    203 4v4g:H1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    204 4v4g:H2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    205 4v4g:H3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    206 4v4g:H4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    207 4v4g:H5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    208 4v4g:H6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    209 4v4g:H7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    210 4v4g:HD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    211 4v4g:HD (11.5) BS02 rna N/A GO:0003723 ... N/A 15502846
    212 4v4g:HE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    213 4v4g:HF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    214 4v4g:HG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    215 4v4g:HG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    216 4v4g:HG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    217 4v4g:HH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    218 4v4g:HI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    219 4v4g:HJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    220 4v4g:HK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    221 4v4g:HL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    222 4v4g:HL (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    223 4v4g:HM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    224 4v4g:HN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    225 4v4g:HN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    226 4v4g:HO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    227 4v4g:HP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    228 4v4g:HP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    229 4v4g:HQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    230 4v4g:HQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    231 4v4g:HR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    232 4v4g:HS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    233 4v4g:HT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    234 4v4g:HU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    235 4v4g:HV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    236 4v4g:HW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    237 4v4g:HW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    238 4v4g:HX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    239 4v4g:HY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    240 4v4g:HZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    241 4v4g:IB (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    242 4v4g:IC (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    243 4v4g:ID (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    244 4v4g:IE (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    245 4v4g:IF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    246 4v4g:IG (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    247 4v4g:IH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    248 4v4g:II (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    249 4v4g:IJ (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    250 4v4g:IK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    251 4v4g:IL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    252 4v4g:IM (11.5) BS01 rna N/A GO:0003676 ... N/A 15502846
    253 4v4g:IN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    254 4v4g:IO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    255 4v4g:IO (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    256 4v4g:IP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    257 4v4g:IQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    258 4v4g:IR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    259 4v4g:IS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    260 4v4g:IT (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    261 4v4g:Ia (11.5) BS01 rna N/A GO:0044238 ... N/A 15502846
    262 4v4g:J1 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    263 4v4g:J2 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    264 4v4g:J3 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    265 4v4g:J4 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    266 4v4g:J5 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    267 4v4g:J6 (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    268 4v4g:J7 (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    269 4v4g:JD (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    270 4v4g:JE (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    271 4v4g:JF (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    272 4v4g:JG (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    273 4v4g:JG (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    274 4v4g:JG (11.5) BS03 rna N/A GO:0003735 ... N/A 15502846
    275 4v4g:JH (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    276 4v4g:JI (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    277 4v4g:JJ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    278 4v4g:JK (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    279 4v4g:JL (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    280 4v4g:JM (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    281 4v4g:JN (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    282 4v4g:JN (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    283 4v4g:JO (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    284 4v4g:JP (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    285 4v4g:JP (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    286 4v4g:JQ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    287 4v4g:JQ (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    288 4v4g:JR (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    289 4v4g:JS (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    290 4v4g:JT (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    291 4v4g:JU (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    292 4v4g:JV (11.5) BS01 rna N/A GO:0003723 ... N/A 15502846
    293 4v4g:JW (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    294 4v4g:JW (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    295 4v4g:JX (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    296 4v4g:JX (11.5) BS02 rna N/A GO:0003735 ... N/A 15502846
    297 4v4g:JY (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    298 4v4g:JZ (11.5) BS01 rna N/A GO:0003735 ... N/A 15502846
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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