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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4k3h:A (2.45) BS01 1OM N/A N/A N/A 23978698 MOAD: Kd=90pM
    PDBbind: -logKd/Ki=6.85, Kd=140nM
    2 4k3h:B (2.45) BS01 1OM N/A N/A N/A 23978698 PDBbind: -logKd/Ki=6.85, Kd=140nM
    3 4k3h:C (2.45) BS01 1OM N/A N/A N/A 23978698
    4 4k3h:D (2.45) BS01 1OM N/A N/A N/A 23978698 MOAD: Kd=90pM
    5 4k3h:D (2.45) BS02 MAN N/A N/A N/A 23978698
    6 4k3h:E (2.45) BS01 1OM N/A N/A N/A 23978698 MOAD: Kd=90pM
    7 4k3h:E (2.45) BS02 MAN N/A N/A N/A 23978698
    8 4k3h:F (2.45) BS01 1OM N/A N/A N/A 23978698
    9 4k3h:G (2.45) BS01 1OM N/A N/A N/A 23978698 MOAD: Kd=90pM
    10 4k3h:H (2.45) BS01 1OM N/A N/A N/A 23978698
    11 4k3h:H (2.45) BS02 MAN N/A N/A N/A 23978698
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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