Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4b3m:B (2.9) BS01 rna ? GO:0003735 ... P80371 24473108
    2 4b3m:B (2.9) BS02 MG ? GO:0003735 ... P80371 24473108
    3 4b3m:C (2.9) BS01 rna ? GO:0003676 ... P80372 24473108
    4 4b3m:D (2.9) BS01 rna ? GO:0003723 ... P80373 24473108
    5 4b3m:D (2.9) BS02 MG ? GO:0003723 ... P80373 24473108
    6 4b3m:E (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 24473108
    7 4b3m:E (2.9) BS02 MG ? GO:0003723 ... Q5SHQ5 24473108
    8 4b3m:F (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 24473108
    9 4b3m:G (2.9) BS01 rna ? GO:0000028 ... P17291 24473108
    10 4b3m:H (2.9) BS01 rna ? GO:0003735 ... P0DOY9 24473108
    11 4b3m:H (2.9) BS02 MG ? GO:0003735 ... P0DOY9 24473108
    12 4b3m:H (2.9) BS03 MG ? GO:0003735 ... P0DOY9 24473108
    13 4b3m:H (2.9) BS04 MG ? GO:0003735 ... P0DOY9 24473108
    14 4b3m:I (2.9) BS01 rna ? GO:0000049 ... P80374 24473108
    15 4b3m:I (2.9) BS02 MG ? GO:0000049 ... P80374 24473108
    16 4b3m:J (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 24473108
    17 4b3m:K (2.9) BS01 rna ? GO:0003735 ... P80376 24473108
    18 4b3m:K (2.9) BS02 MG ? GO:0003735 ... P80376 24473108
    19 4b3m:L (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 24473108
    20 4b3m:L (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 24473108
    21 4b3m:M (2.9) BS01 rna ? GO:0000049 ... P80377 24473108
    22 4b3m:M (2.9) BS02 MG ? GO:0000049 ... P80377 24473108
    23 4b3m:N (2.9) BS01 rna ? GO:0003735 ... P0DOY6 24473108
    24 4b3m:N (2.9) BS02 ZN ? GO:0003735 ... P0DOY6 24473108
    25 4b3m:N (2.9) BS03 MG ? GO:0003735 ... P0DOY6 24473108
    26 4b3m:O (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 24473108
    27 4b3m:P (2.9) BS01 rna ? GO:0003735 ... Q5SJH3 24473108
    28 4b3m:Q (2.9) BS01 rna ? GO:0003735 ... P0DOY7 24473108
    29 4b3m:Q (2.9) BS02 MG ? GO:0003735 ... P0DOY7 24473108
    30 4b3m:R (2.9) BS01 rna ? GO:0003735 ... Q5SLQ0 24473108
    31 4b3m:S (2.9) BS01 rna ? GO:0000028 ... Q5SHP2 24473108
    32 4b3m:T (2.9) BS01 rna ? GO:0003723 ... P80380 24473108
    33 4b3m:T (2.9) BS02 MG ? GO:0003723 ... P80380 24473108
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218