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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3pvo:A (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    2 3pvo:A (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    3 3pvo:B (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    4 3pvo:B (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    5 3pvo:C (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    6 3pvo:C (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    7 3pvo:D (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    8 3pvo:D (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    9 3pvo:E (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    10 3pvo:E (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    11 3pvo:F (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    12 3pvo:F (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    13 3pvo:G (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    14 3pvo:G (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    15 3pvo:H (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    16 3pvo:H (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    17 3pvo:I (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    18 3pvo:I (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    19 3pvo:J (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    20 3pvo:J (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    21 3pvo:K (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    22 3pvo:K (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    23 3pvo:L (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    24 3pvo:L (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    25 3pvo:M (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    26 3pvo:M (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    27 3pvo:N (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    28 3pvo:N (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    29 3pvo:O (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    30 3pvo:O (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    31 3pvo:P (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    32 3pvo:P (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    33 3pvo:Q (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    34 3pvo:Q (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    35 3pvo:R (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    36 3pvo:R (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    37 3pvo:S (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    38 3pvo:S (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    39 3pvo:T (3.0) BS01 CA ? GO:0001849 ... P02741 25552313
    40 3pvo:T (3.0) BS02 CA ? GO:0001849 ... P02741 25552313
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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