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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3krd:2 (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    2 3krd:C (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    3 3krd:C (2.5) BS02 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    4 3krd:E (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    5 3krd:G (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    6 3krd:H (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    7 3krd:J (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    8 3krd:L (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    9 3krd:N (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    10 3krd:N (2.5) BS02 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    11 3krd:P (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    12 3krd:R (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    13 3krd:R (2.5) BS02 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    14 3krd:T (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    15 3krd:V (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    16 3krd:V (2.5) BS02 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    17 3krd:X (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    18 3krd:Z (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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