Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 75 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ja1:L0 (3.6) BS01 rna ? GO:0000027 ... P0A7M6 26229983
    2 3ja1:L1 (3.6) BS01 rna ? GO:0000027 ... P0AG51 26229983
    3 3ja1:L2 (3.6) BS01 rna ? GO:0002181 ... P0A7M9 26229983
    4 3ja1:L2 (3.6) BS02 rna ? GO:0002181 ... P0A7M9 26229983
    5 3ja1:L3 (3.6) BS01 rna ? GO:0000027 ... P0A7N4 26229983
    6 3ja1:L4 (3.6) BS01 rna ? GO:0000027 ... P0A7N9 26229983
    7 3ja1:L5 (3.6) BS01 rna ? GO:0002181 ... P0A7P5 26229983
    8 3ja1:L6 (3.6) BS01 rna ? GO:0002181 ... P0A7Q1 26229983
    9 3ja1:L7 (3.6) BS01 rna ? GO:0002181 ... P0A7Q6 26229983
    10 3ja1:LC (3.6) BS01 rna ? GO:0000027 ... P0A7L0 26229983
    11 3ja1:LC (3.6) BS02 rna ? GO:0000027 ... P0A7L0 26229983
    12 3ja1:LD (3.6) BS01 rna ? GO:0000027 ... P60422 26229983
    13 3ja1:LD (3.6) BS02 rna ? GO:0000027 ... P60422 26229983
    14 3ja1:LE (3.6) BS01 rna ? GO:0000027 ... P60438 26229983
    15 3ja1:LF (3.6) BS01 rna ? GO:0001070 ... P60723 26229983
    16 3ja1:LG (3.6) BS01 rna ? GO:0000027 ... P62399 26229983
    17 3ja1:LG (3.6) BS02 rna ? GO:0000027 ... P62399 26229983
    18 3ja1:LH (3.6) BS01 rna ? GO:0000027 ... P0AG55 26229983
    19 3ja1:LI (3.6) BS01 rna ? GO:0002181 ... P0A7R1 26229983
    20 3ja1:LJ (3.6) BS01 rna ? GO:0002181 ... P0A7J3 26229983
    21 3ja1:LK (3.6) BS01 rna ? GO:0000027 ... P0A7J7 26229983
    22 3ja1:LL (3.6) BS01 rna ? GO:0002181 ... P0AA10 26229983
    23 3ja1:LM (3.6) BS01 rna ? GO:0002181 ... P0ADY3 26229983
    24 3ja1:LM (3.6) BS02 rna ? GO:0002181 ... P0ADY3 26229983
    25 3ja1:LN (3.6) BS01 rna ? GO:0002181 ... P02413 26229983
    26 3ja1:LO (3.6) BS01 rna ? GO:0000027 ... P0ADY7 26229983
    27 3ja1:LO (3.6) BS02 rna ? GO:0000027 ... P0ADY7 26229983
    28 3ja1:LP (3.6) BS01 rna ? GO:0000027 ... P0AG44 26229983
    29 3ja1:LQ (3.6) BS01 rna ? GO:0002181 ... P0C018 26229983
    30 3ja1:LQ (3.6) BS02 rna ? GO:0002181 ... P0C018 26229983
    31 3ja1:LR (3.6) BS01 rna ? GO:0000027 ... P0A7K6 26229983
    32 3ja1:LR (3.6) BS02 rna ? GO:0000027 ... P0A7K6 26229983
    33 3ja1:LS (3.6) BS01 rna ? GO:0000027 ... P0A7L3 26229983
    34 3ja1:LT (3.6) BS01 rna ? GO:0002181 ... P0AG48 26229983
    35 3ja1:LU (3.6) BS01 rna ? GO:0002181 ... P61175 26229983
    36 3ja1:LV (3.6) BS01 rna ? GO:0000027 ... P0ADZ0 26229983
    37 3ja1:LW (3.6) BS01 rna ? GO:0000027 ... P60624 26229983
    38 3ja1:LX (3.6) BS01 rna ? GO:0000027 ... P68919 26229983
    39 3ja1:LY (3.6) BS01 rna ? GO:0000027 ... P0A7L8 26229983
    40 3ja1:LY (3.6) BS02 rna ? GO:0000027 ... P0A7L8 26229983
    41 3ja1:LZ (3.6) BS01 rna ? GO:0000027 ... P0A7M2 26229983
    42 3ja1:S3 (3.6) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    43 3ja1:S3 (3.6) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 26229983
    44 3ja1:S3 (3.6) BS03 GTP 3.6.5.- GO:0003746 ... P0A6M8 26229983
    45 3ja1:SB (3.6) BS01 rna ? GO:0000028 ... P0A7V0 26229983
    46 3ja1:SC (3.6) BS01 rna ? GO:0000028 ... P0A7V3 26229983
    47 3ja1:SC (3.6) BS02 rna ? GO:0000028 ... P0A7V3 26229983
    48 3ja1:SD (3.6) BS01 rna ? GO:0000028 ... P0A7V8 26229983
    49 3ja1:SD (3.6) BS02 rna ? GO:0000028 ... P0A7V8 26229983
    50 3ja1:SE (3.6) BS01 rna ? GO:0000028 ... P0A7W1 26229983
    51 3ja1:SE (3.6) BS02 rna ? GO:0000028 ... P0A7W1 26229983
    52 3ja1:SF (3.6) BS01 rna ? GO:0002181 ... P02358 26229983
    53 3ja1:SF (3.6) BS02 rna ? GO:0002181 ... P02358 26229983
    54 3ja1:SG (3.6) BS01 rna ? GO:0000028 ... P02359 26229983
    55 3ja1:SG (3.6) BS02 rna ? GO:0000028 ... P02359 26229983
    56 3ja1:SH (3.6) BS01 rna ? GO:0000028 ... P0A7W7 26229983
    57 3ja1:SI (3.6) BS01 rna ? GO:0000049 ... P0A7X3 26229983
    58 3ja1:SJ (3.6) BS01 rna ? GO:0000049 ... P0A7R5 26229983
    59 3ja1:SK (3.6) BS01 rna ? GO:0002181 ... P0A7R9 26229983
    60 3ja1:SK (3.6) BS02 rna ? GO:0002181 ... P0A7R9 26229983
    61 3ja1:SK (3.6) BS03 rna ? GO:0002181 ... P0A7R9 26229983
    62 3ja1:SL (3.6) BS01 rna ? GO:0000049 ... P0A7S3 26229983
    63 3ja1:SM (3.6) BS01 rna ? GO:0000049 ... P0A7S9 26229983
    64 3ja1:SN (3.6) BS01 rna ? GO:0000028 ... P0AG59 26229983
    65 3ja1:SO (3.6) BS01 rna ? GO:0003735 ... Q8X9M2 26229983
    66 3ja1:SO (3.6) BS02 rna ? GO:0003735 ... Q8X9M2 26229983
    67 3ja1:SP (3.6) BS01 rna ? GO:0000028 ... P0A7T3 26229983
    68 3ja1:SQ (3.6) BS01 rna ? GO:0000028 ... P0AG63 26229983
    69 3ja1:SR (3.6) BS01 rna ? GO:0002181 ... P0A7T7 26229983
    70 3ja1:SR (3.6) BS02 rna ? GO:0002181 ... P0A7T7 26229983
    71 3ja1:SS (3.6) BS01 rna ? GO:0000028 ... P0A7U3 26229983
    72 3ja1:SS (3.6) BS02 rna ? GO:0000028 ... P0A7U3 26229983
    73 3ja1:ST (3.6) BS01 rna ? GO:0000028 ... P0A7U7 26229983
    74 3ja1:SU (3.6) BS01 rna ? GO:0000028 ... P68679 26229983
    75 3ja1:SU (3.6) BS02 rna ? GO:0000028 ... P68679 26229983
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218