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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ccj:1 (3.3) BS01 rna ? GO:0003723 ... P32410 18455733
    2 3ccj:2 (3.3) BS01 rna ? GO:0003735 ... P22452 18455733
    3 3ccj:3 (3.3) BS01 rna ? GO:0000049 ... P32411 18455733
    4 3ccj:A (3.3) BS01 rna ? GO:0002181 ... P20276 18455733
    5 3ccj:A (3.3) BS02 MG ? GO:0002181 ... P20276 18455733
    6 3ccj:A (3.3) BS03 MG ? GO:0002181 ... P20276 18455733
    7 3ccj:B (3.3) BS01 rna ? GO:0003723 ... P20279 18455733
    8 3ccj:C (3.3) BS01 rna ? GO:0003723 ... P12735 18455733
    9 3ccj:D (3.3) BS01 rna ? GO:0000049 ... P14124 18455733
    10 3ccj:D (3.3) BS02 rna ? GO:0000049 ... P14124 18455733
    11 3ccj:E (3.3) BS01 rna ? GO:0002181 ... P14135 18455733
    12 3ccj:F (3.3) BS01 rna ? GO:0001682 ... P12743 18455733
    13 3ccj:H (3.3) BS01 rna ? GO:0000027 ... P60617 18455733
    14 3ccj:I (3.3) BS01 rna ? GO:0003735 ... P14122 18455733
    15 3ccj:J (3.3) BS01 rna ? GO:0003729 ... P29198 18455733
    16 3ccj:K (3.3) BS01 rna ? GO:0003735 ... P22450 18455733
    17 3ccj:L (3.3) BS01 rna ? GO:0003735 ... P12737 18455733
    18 3ccj:M (3.3) BS01 rna ? GO:0002181 ... P60618 18455733
    19 3ccj:N (3.3) BS01 rna ? GO:0000027 ... P14123 18455733
    20 3ccj:N (3.3) BS02 rna ? GO:0000027 ... P14123 18455733
    21 3ccj:O (3.3) BS01 rna ? GO:0003723 ... P12733 18455733
    22 3ccj:P (3.3) BS01 rna ? GO:0003723 ... P14119 18455733
    23 3ccj:Q (3.3) BS01 rna ? GO:0003735 ... P12734 18455733
    24 3ccj:Q (3.3) BS02 rna ? GO:0003735 ... P12734 18455733
    25 3ccj:R (3.3) BS01 rna ? GO:0002181 ... P10970 18455733
    26 3ccj:S (3.3) BS01 rna ? GO:0000027 ... P12732 18455733
    27 3ccj:T (3.3) BS01 rna ? GO:0002181 ... P10972 18455733
    28 3ccj:T (3.3) BS02 MG ? GO:0002181 ... P10972 18455733
    29 3ccj:U (3.3) BS01 rna ? GO:0003735 ... P14116 18455733
    30 3ccj:V (3.3) BS01 rna ? GO:0003735 ... P10971 18455733
    31 3ccj:W (3.3) BS01 rna ? GO:0000463 ... P14121 18455733
    32 3ccj:W (3.3) BS02 rna ? GO:0000463 ... P14121 18455733
    33 3ccj:X (3.3) BS01 rna ? GO:0002181 ... P18138 18455733
    34 3ccj:Y (3.3) BS01 rna ? GO:0000166 ... P12736 18455733
    35 3ccj:Z (3.3) BS01 rna ? GO:0003735 ... P60619 18455733
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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