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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2vxj:A (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    2 2vxj:A (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    3 2vxj:A (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    4 2vxj:B (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    5 2vxj:B (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    6 2vxj:B (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    7 2vxj:C (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    8 2vxj:C (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    9 2vxj:C (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    10 2vxj:D (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    11 2vxj:D (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    12 2vxj:D (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    13 2vxj:D (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    14 2vxj:E (1.9) BS01 GLC ? GO:0005737 ... Q05097 18762193
    15 2vxj:E (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    16 2vxj:E (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    17 2vxj:E (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    18 2vxj:F (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    19 2vxj:F (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    20 2vxj:F (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    21 2vxj:F (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    22 2vxj:G (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    23 2vxj:G (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    24 2vxj:G (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    25 2vxj:H (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    26 2vxj:H (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    27 2vxj:H (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    28 2vxj:I (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    29 2vxj:I (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    30 2vxj:I (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    31 2vxj:I (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    32 2vxj:J (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    33 2vxj:J (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    34 2vxj:J (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    35 2vxj:K (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    36 2vxj:K (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    37 2vxj:K (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    38 2vxj:L (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    39 2vxj:L (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    40 2vxj:L (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    41 2vxj:L (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    42 2vxj:M (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    43 2vxj:M (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    44 2vxj:M (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    45 2vxj:M (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    46 2vxj:N (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    47 2vxj:N (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    48 2vxj:N (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    49 2vxj:O (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    50 2vxj:O (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    51 2vxj:O (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    52 2vxj:P (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    53 2vxj:P (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    54 2vxj:P (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    55 2vxj:Q (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    56 2vxj:Q (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    57 2vxj:Q (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    58 2vxj:Q (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    59 2vxj:R (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    60 2vxj:R (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    61 2vxj:R (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    62 2vxj:R (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    63 2vxj:S (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    64 2vxj:S (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    65 2vxj:S (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    66 2vxj:S (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    67 2vxj:T (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    68 2vxj:T (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    69 2vxj:T (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    70 2vxj:U (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    71 2vxj:U (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    72 2vxj:U (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    73 2vxj:V (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    74 2vxj:V (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    75 2vxj:V (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    76 2vxj:V (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    77 2vxj:W (1.9) BS01 BGC ? GO:0005737 ... Q05097 18762193
    78 2vxj:W (1.9) BS02 GAL ? GO:0005737 ... Q05097 18762193
    79 2vxj:W (1.9) BS03 GLA ? GO:0005737 ... Q05097 18762193
    80 2vxj:W (1.9) BS04 CA ? GO:0005737 ... Q05097 18762193
    81 2vxj:X (1.9) BS01 GAL ? GO:0005737 ... Q05097 18762193
    82 2vxj:X (1.9) BS02 GLA ? GO:0005737 ... Q05097 18762193
    83 2vxj:X (1.9) BS03 CA ? GO:0005737 ... Q05097 18762193
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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