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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xfv:A (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    2 1xfv:A (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022 PDBbind: -logKd/Ki=3.89, Kd=130uM
    3 1xfv:B (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    4 1xfv:B (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    5 1xfv:C (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    6 1xfv:C (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    7 1xfv:D (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    8 1xfv:D (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    9 1xfv:E (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    10 1xfv:E (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    11 1xfv:F (3.35) BS01 MG 4.6.1.1 GO:0003824 ... P40136 15719022
    12 1xfv:F (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022
    13 1xfv:O (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    14 1xfv:O (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    15 1xfv:O (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    16 1xfv:P (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    17 1xfv:P (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    18 1xfv:P (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    19 1xfv:Q (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    20 1xfv:Q (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    21 1xfv:Q (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    22 1xfv:R (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    23 1xfv:R (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    24 1xfv:R (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    25 1xfv:S (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    26 1xfv:S (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    27 1xfv:S (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    28 1xfv:T (3.35) BS01 CA ? GO:0000086 ... P0DP23 15719022
    29 1xfv:T (3.35) BS02 CA ? GO:0000086 ... P0DP23 15719022
    30 1xfv:T (3.35) BS03 CA ? GO:0000086 ... P0DP23 15719022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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