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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xbp:A (3.5) BS01 rna ? GO:0002181 ... Q9RXJ9 15554968
    2 1xbp:B (3.5) BS01 rna ? GO:0003735 ... Q9RXK2 15554968
    3 1xbp:C (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 15554968
    4 1xbp:G (3.5) BS01 rna ? GO:0003735 ... Q9RSS7 15554968
    5 1xbp:H (3.5) BS01 rna ? GO:0003729 ... Q9RXY1 15554968
    6 1xbp:I (3.5) BS01 rna ? GO:0003735 ... Q9RXJ2 15554968
    7 1xbp:J (3.5) BS01 rna ? GO:0003735 ... Q9RSK9 15554968
    8 1xbp:L (3.5) BS01 rna ? GO:0003735 ... Q9RSJ5 15554968
    9 1xbp:O (3.5) BS01 rna ? GO:0000027 ... Q9RSW7 15554968
    10 1xbp:P (3.5) BS01 rna ? GO:0003723 ... Q9RY64 15554968
    11 1xbp:Q (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 15554968
    12 1xbp:R (3.5) BS01 rna ? GO:0000027 ... Q9RXK0 15554968
    13 1xbp:T (3.5) BS01 rna ? GO:0000049 ... Q9RX88 15554968
    14 1xbp:X (3.5) BS01 rna ? GO:0003735 ... Q9RSL0 15554968
    15 1xbp:Y (3.5) BS01 rna ? GO:0000049 ... Q9RW44 15554968
    16 1xbp:Z (3.5) BS01 rna ? GO:0003735 ... P49228 15554968
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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