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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    18401 1hga:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18402 1hga:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18403 1hga:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18404 1hgb:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18405 1hgb:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18406 1hgb:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18407 1hgb:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18408 1hgc:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18409 1hgc:A (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    18410 1hgc:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18411 1hgc:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1453464
    18412 1hgc:C (2.1) BS02 OXY ? GO:0004601 ... P69905 1453464
    18413 1hgc:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1453464
    18414 1hge:A (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.27, Kd=5.4mM
    18415 1hge:C (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    18416 1hge:E (2.6) BS01 MNA ? GO:0019031 ... P03438 1327122
    18417 1hgg:A (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    18418 1hgg:A (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    18419 1hgg:A (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    18420 1hgg:A (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    18421 1hgg:B (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18422 1hgg:C (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    18423 1hgg:C (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    18424 1hgg:C (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    18425 1hgg:C (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    18426 1hgg:D (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18427 1hgg:E (2.9) BS01 GAL ? GO:0019031 ... P03437 1327122
    18428 1hgg:E (2.9) BS02 SIA ? GO:0019031 ... P03437 1327122
    18429 1hgg:E (2.9) BS03 BGC ? GO:0019031 ... P03437 1327122
    18430 1hgg:E (2.9) BS04 SIA ? GO:0019031 ... P03437 1327122
    18431 1hgg:F (2.9) BS01 SIA ? GO:0019031 ... P03437 1327122
    18432 1hgh:A (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18433 1hgh:A (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    18434 1hgh:B (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18435 1hgh:C (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18436 1hgh:C (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    18437 1hgh:D (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18438 1hgh:E (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18439 1hgh:E (2.7) BS02 MNA ? GO:0019031 ... P03438 1327122
    18440 1hgh:F (2.7) BS01 MNA ? GO:0019031 ... P03438 1327122
    18441 1hgi:A (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=2.68, Kd=2.1mM
    18442 1hgi:C (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122
    18443 1hgi:E (2.7) BS01 ANA ? GO:0019031 ... P03438 1327122
    18444 1hgj:A (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122 PDBbind: -logKd/Ki=1.66, Kd=22mM
    18445 1hgj:C (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122
    18446 1hgj:E (2.7) BS01 AMN ? GO:0019031 ... P03438 1327122
    18447 1hgt:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 1942057
    18448 1hgw:A (2.1) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18449 1hgw:A (2.1) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18450 1hgw:A (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18451 1hgw:A (2.1) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18452 1hgw:A (2.1) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18453 1hgw:A (2.1) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18454 1hgw:B (2.1) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18455 1hgw:B (2.1) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18456 1hgw:B (2.1) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18457 1hgw:B (2.1) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18458 1hgw:B (2.1) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18459 1hgw:B (2.1) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18460 1hgx:A (1.9) BS01 5GP 2.4.2.22
    2.4.2.8
    GO:0000166 ... P51900 8679528
    18461 1hgy:A (2.2) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18462 1hgy:A (2.2) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18463 1hgy:A (2.2) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18464 1hgy:A (2.2) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18465 1hgy:A (2.2) BS05 GLC 3.2.1.91 GO:0004553 ... P07987 12188666
    18466 1hgy:B (2.2) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18467 1hgy:B (2.2) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18468 1hgy:B (2.2) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18469 1hgy:B (2.2) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 12188666
    18470 1hh4:A (2.7) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11513578
    18471 1hh4:A (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    18472 1hh4:B (2.7) BS01 GDP 3.6.5.2 GO:0001764 ... P63000 11513578
    18473 1hh4:B (2.7) BS02 MG 3.6.5.2 GO:0001764 ... P63000 11513578
    18474 1hh4:B (2.7) BS03 GER 3.6.5.2 GO:0001764 ... P63000 11513578
    18475 1hh4:D (2.7) BS01 GER ? GO:0001772 ... P52565 11513578
    18476 1hh4:E (2.7) BS01 GER ? GO:0001772 ... P52565 11513578
    18477 1hh5:A (1.9) BS01 HEC ? GO:0009055 ... P00137 11320307
    18478 1hh5:A (1.9) BS02 HEC ? GO:0009055 ... P00137 11320307
    18479 1hh5:A (1.9) BS03 HEC ? GO:0009055 ... P00137 11320307
    18480 1hh6:A (2.6) BS01 peptide ? GO:0005576 ... P01837 10990450
    18481 1hh6:B (2.6) BS01 peptide ? N/A P01864 10990450
    18482 1hh7:A (1.4) BS01 HEC ? GO:0009055 ... P00091 11092951
    18483 1hh9:A (2.7) BS01 peptide ? GO:0005576 ... P01837 10990450
    18484 1hh9:B (2.7) BS01 peptide ? N/A P01864 10990450
    18485 1hhg:A (2.6) BS01 peptide ? N/A P04439 7694806
    18486 1hhg:D (2.6) BS01 peptide ? N/A P04439 7694806
    18487 1hhh:A (3.0) BS01 peptide ? N/A P04439 7694806
    18488 1hhi:A (2.5) BS01 peptide ? N/A P04439 7694806
    18489 1hhi:D (2.5) BS01 peptide ? N/A P04439 7694806
    18490 1hhj:A (2.5) BS01 peptide ? N/A P04439 7694806
    18491 1hhj:D (2.5) BS01 peptide ? N/A P04439 7694806
    18492 1hhk:A (2.5) BS01 peptide ? N/A P04439 7694806
    18493 1hhk:D (2.5) BS01 peptide ? N/A P04439 7694806
    18494 1hho:A (2.1) BS01 HEM ? GO:0004601 ... P69905 6644819
    18495 1hho:A (2.1) BS02 OXY ? GO:0004601 ... P69905 6644819
    18496 1hho:B (2.1) BS01 HEM ? GO:0004601 ... P68871 6644819
    18497 1hho:B (2.1) BS02 OXY ? GO:0004601 ... P68871 6644819
    18498 1hhs:A (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18499 1hhs:B (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18500 1hhs:C (2.0) BS01 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18501 1hht:P (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18502 1hht:P (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18503 1hht:Q (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18504 1hht:Q (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18505 1hht:R (2.9) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18506 1hht:R (2.9) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18507 1hi0:P (3.0) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18508 1hi0:P (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18509 1hi0:P (3.0) BS03 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18510 1hi0:P (3.0) BS04 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18511 1hi0:Q (3.0) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18512 1hi0:Q (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18513 1hi0:Q (3.0) BS03 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18514 1hi0:Q (3.0) BS04 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18515 1hi0:R (3.0) BS01 dna 2.7.7.48 GO:0000166 ... P11124 11242087
    18516 1hi0:R (3.0) BS02 MN 2.7.7.48 GO:0000166 ... P11124 11242087
    18517 1hi0:R (3.0) BS03 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18518 1hi0:R (3.0) BS04 GTP 2.7.7.48 GO:0000166 ... P11124 11242087
    18519 1hi1:A (3.0) BS01 ATP 2.7.7.48 GO:0000166 ... P11124 11242087
    18520 1hi1:B (3.0) BS01 ATP 2.7.7.48 GO:0000166 ... P11124 11242087
    18521 1hi1:C (3.0) BS01 ATP 2.7.7.48 GO:0000166 ... P11124 11242087
    18522 1hi2:A (1.6) BS01 SO4 4.6.1.18 GO:0001530 ... P10153 11154698
    18523 1hi2:A (1.6) BS02 SO4 4.6.1.18 GO:0001530 ... P10153 11154698
    18524 1hi3:A (1.8) BS01 A2P 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=64uM
    PDBbind: -logKd/Ki=4.19, Ki=64uM
    18525 1hi4:A (1.8) BS01 A3P 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=32uM
    PDBbind: -logKd/Ki=4.49, Ki=32uM
    18526 1hi5:A (1.8) BS01 ADP 4.6.1.18 GO:0001530 ... P10153 11154698 MOAD: Ki=92uM
    PDBbind: -logKd/Ki=4.04, Ki=92uM
    18527 1hi6:A (2.55) BS01 peptide ? GO:0005576 ... P01837 9413990
    18528 1hi6:B (2.55) BS01 peptide ? N/A P01864 9413990
    18529 1hi8:A (2.5) BS01 MG 2.7.7.48 GO:0000166 ... P11124 11242087
    18530 1hi8:B (2.5) BS01 MG 2.7.7.48 GO:0000166 ... P11124 11242087
    18531 1hi9:A (2.4) BS01 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18532 1hi9:A (2.4) BS02 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18533 1hi9:B (2.4) BS01 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18534 1hi9:B (2.4) BS02 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18535 1hi9:C (2.4) BS01 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18536 1hi9:C (2.4) BS02 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18537 1hi9:D (2.4) BS01 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18538 1hi9:D (2.4) BS02 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18539 1hi9:E (2.4) BS01 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18540 1hi9:E (2.4) BS02 ZN 3.4.11.- GO:0004177 ... P26902 11473256
    18541 1hih:A (2.2) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 7613867 PDBbind: -logKd/Ki=8.05, Ki=9nM
    18542 1hih:B (2.2) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P03366 7613867 MOAD: Ki=9nM
    PDBbind: -logKd/Ki=8.05, Ki=9nM
    18543 1hii:A (2.3) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47
    GO:0004190 ... P04584 7613867 PDBbind: -logKd/Ki=7.28, Ki=53nM
    18544 1hii:B (2.3) BS01 C20 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.47
    GO:0004190 ... P04584 7613867 MOAD: Ki=53nM
    PDBbind: -logKd/Ki=7.28, Ki=53nM
    18545 1him:H (2.9) BS01 peptide N/A N/A N/A 1546293
    18546 1him:J (2.9) BS01 peptide N/A N/A N/A 1546293
    18547 1him:L (2.9) BS01 peptide N/A N/A N/A 1546293
    18548 1him:M (2.9) BS01 peptide N/A N/A N/A 1546293
    18549 1hin:H (3.1) BS01 peptide N/A N/A N/A 1546293
    18550 1hin:L (3.1) BS01 peptide N/A N/A N/A 1546293
    18551 1hip:A (2.0) BS01 SF4 ? GO:0009055 ... P00260 4855287
    18552 1hiq:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 8421693
    18553 1hit:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 1961250
    18554 1hiv:A (2.0) BS01 1ZK 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 1304383 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Ki<1.0nM
    18555 1hiv:B (2.0) BS01 1ZK 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P04585 1304383 PDBbind: -logKd/Ki=9.00, Ki<1.0nM
    18556 1hiy:A (2.6) BS01 3AN 2.7.4.6 GO:0004550 ... P22887 11294625 PDBbind: -logKd/Ki=3.08, Kd=0.83mM
    18557 1hiy:B (2.6) BS01 3AN 2.7.4.6 GO:0004550 ... P22887 11294625 PDBbind: -logKd/Ki=3.08, Kd=0.83mM
    18558 1hiy:C (2.6) BS01 3AN 2.7.4.6 GO:0004550 ... P22887 11294625
    18559 1hiz:A (2.4) BS01 GLA 3.2.1.8 GO:0004553 ... P40943 15103129
    18560 1hiz:A (2.4) BS02 GLC 3.2.1.8 GO:0004553 ... P40943 15103129
    18561 1hj1:A (2.3) BS01 AOE ? N/A Q62986 11250199
    18562 1hj1:A (2.3) BS02 PMB ? N/A Q62986 11250199
    18563 1hj3:A (1.6) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18564 1hj3:A (1.6) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18565 1hj3:B (1.6) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18566 1hj3:B (1.6) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18567 1hj4:A (1.6) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18568 1hj4:A (1.6) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18569 1hj4:B (1.6) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18570 1hj4:B (1.6) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18571 1hj5:A (1.46) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18572 1hj5:A (1.46) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18573 1hj5:B (1.46) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18574 1hj5:B (1.46) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11278884
    18575 1hj6:A (2.0) BS01 IPM 1.1.1.42 GO:0000287 ... P08200 11284679
    18576 1hj6:A (2.0) BS02 NAP 1.1.1.42 GO:0000287 ... P08200 11284679
    18577 1hj7:A (-1.00) BS01 CA ? GO:0005509 ... P01130 11435110
    18578 1hj7:A (-1.00) BS02 CA ? GO:0005509 ... P01130 11435110
    18579 1hj8:A (1.0) BS01 CA 3.4.21.4 GO:0004252 ... P35031 11264577
    18580 1hj9:A (0.95) BS01 ANL 3.4.21.4 GO:0004175 ... P00760 11264577
    18581 1hj9:A (0.95) BS02 CA 3.4.21.4 GO:0004175 ... P00760 11264577
    18582 1hja:B (2.3) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 N/A
    18583 1hja:C (2.3) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 N/A
    18584 1hjb:A (3.0) BS01 dna ? GO:0003700 ... P17676 11257229
    18585 1hjb:A (3.0) BS02 dna ? GO:0003700 ... P17676 11257229
    18586 1hjb:B (3.0) BS01 dna ? GO:0003700 ... P17676 11257229
    18587 1hjb:B (3.0) BS02 dna ? GO:0003700 ... P17676 11257229
    18588 1hjb:C (3.0) BS01 dna ? GO:0003677 ... Q03347 11257229
    18589 1hjb:C (3.0) BS02 dna ? GO:0003677 ... Q03347 11257229
    18590 1hjb:D (3.0) BS01 dna ? GO:0003700 ... P17676 11257229
    18591 1hjb:D (3.0) BS02 dna ? GO:0003700 ... P17676 11257229
    18592 1hjb:E (3.0) BS01 dna ? GO:0003700 ... P17676 11257229
    18593 1hjb:E (3.0) BS02 dna ? GO:0003700 ... P17676 11257229
    18594 1hjb:F (3.0) BS01 dna ? GO:0003677 ... Q03347 11257229
    18595 1hjb:F (3.0) BS02 dna ? GO:0003677 ... Q03347 11257229
    18596 1hjc:A (2.65) BS01 dna ? GO:0003677 ... Q03347 11257229
    18597 1hjc:A (2.65) BS02 dna ? GO:0003677 ... Q03347 11257229
    18598 1hjc:D (2.65) BS01 dna ? GO:0003677 ... Q03347 11257229
    18599 1hjc:D (2.65) BS02 dna ? GO:0003677 ... Q03347 11257229
    18600 1hjf:A (1.6) BS01 FE2 1.14.20.1 GO:0005506 ... P18548 11279000

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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