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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14801 1gcz:B (1.9) BS01 YZ9 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 11170644 MOAD: Ki=7.4uM
    BindingDB: Ki=7400nM
    14802 1gcz:B (1.9) BS02 YZ9 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 11170644 MOAD: Ki=7.4uM
    BindingDB: Ki=7400nM
    14803 1gcz:C (1.9) BS01 YZ9 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 11170644 MOAD: Ki=7.4uM
    PDBbind: -logKd/Ki=5.13, Ki=7.4uM
    BindingDB: Ki=7400nM
    14804 1gcz:C (1.9) BS02 YZ9 5.3.2.1
    5.3.3.12
    GO:0001516 ... P14174 11170644 MOAD: Ki=7.4uM
    PDBbind: -logKd/Ki=5.13, Ki=7.4uM
    BindingDB: Ki=7400nM
    14805 1gd1:O (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 3586018
    14806 1gd1:P (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 3586018
    14807 1gd1:Q (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 3586018
    14808 1gd1:R (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P00362 3586018
    14809 1gd2:E (2.0) BS01 dna ? GO:0003700 ... Q01663 11017199
    14810 1gd2:E (2.0) BS02 dna ? GO:0003700 ... Q01663 11017199
    14811 1gd2:F (2.0) BS01 dna ? GO:0003700 ... Q01663 11017199
    14812 1gd2:F (2.0) BS02 dna ? GO:0003700 ... Q01663 11017199
    14813 1gd2:F (2.0) BS03 dna ? GO:0003700 ... Q01663 11017199
    14814 1gd2:G (2.0) BS01 dna ? GO:0003700 ... Q01663 11017199
    14815 1gd2:G (2.0) BS02 dna ? GO:0003700 ... Q01663 11017199
    14816 1gd2:H (2.0) BS01 dna ? GO:0003700 ... Q01663 11017199
    14817 1gd2:H (2.0) BS02 dna ? GO:0003700 ... Q01663 11017199
    14818 1gd2:I (2.0) BS01 peptide ? GO:0003700 ... Q01663 11017199
    14819 1gd9:A (1.8) BS01 PLP 2.6.1.- GO:0003824 ... O59096 11134972
    14820 1gd9:B (1.8) BS01 PLP 2.6.1.- GO:0003824 ... O59096 11134972
    14821 1gdc:A (-1.00) BS01 ZN ? GO:0003700 ... P06536 8257681
    14822 1gdc:A (-1.00) BS02 ZN ? GO:0003700 ... P06536 8257681
    14823 1gdd:A (2.2) BS01 GDP ? GO:0000287 ... P10824 7481799
    14824 1gde:A (1.8) BS01 GLU 2.6.1.- GO:0003824 ... O59096 11134972
    14825 1gde:A (1.8) BS02 PLP 2.6.1.- GO:0003824 ... O59096 11134972
    14826 1gde:B (1.8) BS01 GLU 2.6.1.- GO:0003824 ... O59096 11134972
    14827 1gde:B (1.8) BS02 PLP 2.6.1.- GO:0003824 ... O59096 11134972
    14828 1gdi:A (1.8) BS01 HEM ? GO:0005344 ... P02240 8950274
    14829 1gdi:A (1.8) BS02 CMO ? GO:0005344 ... P02240 8950274
    14830 1gdj:A (1.7) BS01 HEM ? GO:0005344 ... P02240 7643380
    14831 1gdk:A (1.8) BS01 HEM ? GO:0005344 ... P02240 N/A
    14832 1gdk:A (1.8) BS02 ISQ ? GO:0005344 ... P02240 N/A
    14833 1gdl:A (1.8) BS01 HEM ? GO:0005344 ... P02240 8950274
    14834 1gdn:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    14835 1gdq:A (0.93) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    14836 1gdt:A (3.0) BS01 dna ? GO:0000150 ... P03012 7628011
    14837 1gdt:A (3.0) BS02 dna ? GO:0000150 ... P03012 7628011
    14838 1gdt:A (3.0) BS03 dna ? GO:0000150 ... P03012 7628011
    14839 1gdt:B (3.0) BS01 dna ? GO:0000150 ... P03012 7628011
    14840 1gdt:B (3.0) BS02 dna ? GO:0000150 ... P03012 7628011
    14841 1gdt:B (3.0) BS03 dna ? GO:0000150 ... P03012 7628011
    14842 1gdu:A (1.07) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    14843 1gdv:A (1.57) BS01 HEC ? GO:0005506 ... Q8WKJ8 11092924
    14844 1ge5:A (2.0) BS01 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    14845 1ge6:A (2.2) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    14846 1ge6:A (2.2) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    14847 1ge7:A (2.0) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    14848 1ge7:A (2.0) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    14849 1ge7:B (2.0) BS01 MAN 3.4.24.20 GO:0004222 ... P81054 11223512
    14850 1ge7:B (2.0) BS02 ZN 3.4.24.20 GO:0004222 ... P81054 11223512
    14851 1geb:A (2.03) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11098139
    14852 1geb:A (2.03) BS02 CAM 1.14.15.1 GO:0004497 ... P00183 11098139
    14853 1gec:E (2.1) BS01 peptide 3.4.22.25 GO:0006508 ... P05994 7548082
    14854 1ged:A (2.0) BS01 BR 1.7.1.14 GO:0004497 ... P23295 11076941
    14855 1ged:A (2.0) BS02 BR 1.7.1.14 GO:0004497 ... P23295 11076941
    14856 1ged:A (2.0) BS03 HEM 1.7.1.14 GO:0004497 ... P23295 11076941
    14857 1gee:A (1.6) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    14858 1gee:B (1.6) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    14859 1gee:E (1.6) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    14860 1gee:F (1.6) BS01 NAD 1.1.1.47 GO:0016491 ... P40288 N/A
    14861 1geg:A (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14862 1geg:A (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14863 1geg:B (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14864 1geg:B (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14865 1geg:C (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14866 1geg:C (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14867 1geg:D (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14868 1geg:D (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14869 1geg:E (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14870 1geg:E (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14871 1geg:F (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14872 1geg:F (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14873 1geg:G (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14874 1geg:G (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14875 1geg:H (1.7) BS01 GLC 1.1.1.304 GO:0016491 ... Q48436 11173520
    14876 1geg:H (1.7) BS02 NAD 1.1.1.304 GO:0016491 ... Q48436 11173520
    14877 1gei:A (1.6) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11258878
    14878 1gei:A (1.6) BS02 NBN 1.7.1.14 GO:0004497 ... P23295 11258878
    14879 1gej:A (1.5) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11258878
    14880 1gej:A (1.5) BS02 NBN 1.7.1.14 GO:0004497 ... P23295 11258878
    14881 1gek:A (1.7) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11258878
    14882 1gem:A (2.0) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 11258878
    14883 1gen:A (2.15) BS01 CA 3.4.24.24 N/A P08253 7583664
    14884 1ger:A (1.86) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 8061609
    14885 1ger:B (1.86) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 8061609
    14886 1ges:A (1.74) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14887 1ges:B (1.74) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14888 1get:A (2.0) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14889 1get:A (2.0) BS02 NAP 1.8.1.7 GO:0004362 ... P06715 7833810
    14890 1get:B (2.0) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14891 1get:B (2.0) BS02 NAP 1.8.1.7 GO:0004362 ... P06715 7833810
    14892 1geu:A (2.2) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14893 1geu:A (2.2) BS02 NAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14894 1geu:B (2.2) BS01 FAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14895 1geu:B (2.2) BS02 NAD 1.8.1.7 GO:0004362 ... P06715 7833810
    14896 1gew:A (2.0) BS01 PLP 2.6.1.9 GO:0000105 ... P06986 11294630
    14897 1gex:A (2.2) BS01 PLP 2.6.1.9 GO:0000105 ... P06986 11294630
    14898 1gex:A (2.2) BS02 HSA 2.6.1.9 GO:0000105 ... P06986 11294630
    14899 1gey:A (2.3) BS01 PPE 2.6.1.9 GO:0000105 ... P06986 11294630
    14900 1gff:1 (3.0) BS01 peptide ? GO:0005198 ... P03642 8642594
    14901 1gfi:A (2.2) BS01 MG ? GO:0000287 ... P10824 8073283
    14902 1gfi:A (2.2) BS02 ALF ? GO:0000287 ... P10824 8073283
    14903 1gfi:A (2.2) BS03 GDP ? GO:0000287 ... P10824 8073283
    14904 1gfm:A (3.5) BS01 C8E ? GO:0001530 ... P02931 8702816
    14905 1gfm:A (3.5) BS02 C8E ? GO:0001530 ... P02931 8702816
    14906 1gfn:A (3.1) BS01 C8E ? GO:0001530 ... P02931 8702816
    14907 1gfn:A (3.1) BS02 C8E ? GO:0001530 ... P02931 8702816
    14908 1gfo:A (3.3) BS01 C8E ? GO:0001530 ... P02931 8702816
    14909 1gfo:A (3.3) BS02 C8E ? GO:0001530 ... P02931 8702816
    14910 1gfp:A (2.7) BS01 C8E ? GO:0001530 ... P02931 8702816
    14911 1gfp:A (2.7) BS02 C8E ? GO:0001530 ... P02931 8702816
    14912 1gfq:A (2.8) BS01 C8E ? GO:0001530 ... P02931 8702816
    14913 1gfw:A (2.8) BS01 MSI 3.4.22.56 GO:0004197 ... P42574 10821855 PDBbind: -logKd/Ki=7.82, Ki=15nM
    BindingDB: Ki=15nM, IC50=114nM, EC50=7670nM
    14914 1gfw:B (2.8) BS01 MSI 3.4.22.56 GO:0004197 ... P42574 10821855 PDBbind: -logKd/Ki=7.82, Ki=15nM
    BindingDB: Ki=15nM, IC50=114nM, EC50=7670nM
    14915 1gfy:A (2.13) BS01 COL 3.1.3.48 GO:0004725 ... P18031 10748206 PDBbind: -logKd/Ki=5.08, Ki=8.32uM
    BindingDB: Ki=8317.64nM
    14916 1gfz:A (2.3) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 10924512
    14917 1gfz:A (2.3) BS02 IMP 2.4.1.1 GO:0000166 ... P00489 10924512
    14918 1gfz:A (2.3) BS03 CFF 2.4.1.1 GO:0000166 ... P00489 10924512 MOAD: Ki~0.15mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    BindingDB: IC50=114000nM
    14919 1gg0:A (3.0) BS01 PO4 2.5.1.55 GO:0005737 ... P0A715 10926505
    14920 1gg1:A (2.0) BS01 PGA 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14921 1gg1:A (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14922 1gg1:B (2.0) BS01 PGA 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14923 1gg1:B (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14924 1gg1:C (2.0) BS01 PGA 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14925 1gg1:C (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14926 1gg1:D (2.0) BS01 PGA 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14927 1gg1:D (2.0) BS02 MN 2.5.1.54 GO:0003849 ... P0AB91 10926516
    14928 1gg2:A (2.4) BS01 GDP ? GO:0000287 ... P10824 8521505
    14929 1gg5:A (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14930 1gg5:A (2.5) BS02 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14931 1gg5:A (2.5) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14932 1gg5:A (2.5) BS04 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14933 1gg5:B (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14934 1gg5:B (2.5) BS02 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14935 1gg5:B (2.5) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14936 1gg5:B (2.5) BS04 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14937 1gg5:C (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14938 1gg5:C (2.5) BS02 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14939 1gg5:C (2.5) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14940 1gg5:C (2.5) BS04 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14941 1gg5:D (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14942 1gg5:D (2.5) BS02 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14943 1gg5:D (2.5) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    14944 1gg5:D (2.5) BS04 E09 1.6.5.2 GO:0000209 ... P15559 11587640
    14945 1gg6:B (1.4) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 11327865
    14946 1gg6:B (1.4) BS02 APL 3.4.21.1 GO:0004252 ... P00766 11327865
    14947 1gg6:C (1.4) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 11327865
    14948 1gg6:C (1.4) BS02 APF 3.4.21.1 GO:0004252 ... P00766 11327865
    14949 1gg8:A (2.31) BS01 GLG 2.4.1.1 GO:0000166 ... P00489 8180201 MOAD: Ki=1mM
    BindingDB: Ki=370000nM
    14950 1gg8:A (2.31) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 8180201
    14951 1gg8:A (2.31) BS03 IMP 2.4.1.1 GO:0000166 ... P00489 8180201
    14952 1gg9:A (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14953 1gg9:B (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14954 1gg9:C (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14955 1gg9:D (1.89) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14956 1ggd:B (1.5) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 11327865
    14957 1ggd:B (1.5) BS02 FAF 3.4.21.1 GO:0004252 ... P00766 11327865 PDBbind: -logKd/Ki=5.80, Kd=1.6uM
    14958 1ggd:C (1.5) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 11327865
    14959 1ggd:C (1.5) BS02 FAF 3.4.21.1 GO:0004252 ... P00766 11327865 PDBbind: -logKd/Ki=5.80, Kd=1.6uM
    14960 1gge:A (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14961 1gge:B (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14962 1gge:C (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14963 1gge:D (1.89) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14964 1ggf:A (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14965 1ggf:A (2.28) BS02 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14966 1ggf:A (2.28) BS03 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14967 1ggf:B (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14968 1ggf:B (2.28) BS02 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14969 1ggf:B (2.28) BS03 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14970 1ggf:C (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14971 1ggf:C (2.28) BS02 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14972 1ggf:C (2.28) BS03 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14973 1ggf:D (2.28) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14974 1ggf:D (2.28) BS02 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14975 1ggf:D (2.28) BS03 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14976 1ggf:D (2.28) BS04 PEO 1.11.1.6 GO:0004096 ... P21179 11455600
    14977 1ggh:A (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14978 1ggh:B (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14979 1ggh:C (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14980 1ggh:D (2.15) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14981 1ggi:H (2.8) BS01 peptide ? N/A P01863 8327513
    14982 1ggi:J (2.8) BS01 peptide ? N/A P01863 8327513
    14983 1ggi:L (2.8) BS01 peptide N/A N/A N/A 8327513
    14984 1ggi:M (2.8) BS01 peptide N/A N/A N/A 8327513
    14985 1ggj:A (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14986 1ggj:B (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14987 1ggj:C (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14988 1ggj:D (1.92) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 11455600
    14989 1ggk:A (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14990 1ggk:B (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14991 1ggk:C (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14992 1ggk:D (2.26) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 11455600
    14993 1ggm:A (3.4) BS01 GAP 6.1.1.14 GO:0000166 ... P56206 10064708
    14994 1ggm:B (3.4) BS01 GAP 6.1.1.14 GO:0000166 ... P56206 10064708
    14995 1ggn:A (2.36) BS01 GLS 2.4.1.1 GO:0000166 ... P00489 11741774 MOAD: Ki=3.1uM
    PDBbind: -logKd/Ki=5.51, Ki=3.1uM
    BindingDB: Ki=3100nM, IC50=3100nM
    14996 1ggn:A (2.36) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 11741774
    14997 1ggy:A (2.5) BS01 YB 2.3.2.13 GO:0003810 ... P00488 9988734
    14998 1ggy:B (2.5) BS01 YB 2.3.2.13 GO:0003810 ... P00488 9988734
    14999 1ggy:B (2.5) BS02 YB 2.3.2.13 GO:0003810 ... P00488 9988734
    15000 1ggz:A (1.5) BS01 CA ? GO:0005509 ... P27482 12067719

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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