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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902401 9fcu:A (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    902402 9fcu:B (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    902403 9fcu:C (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    902404 9fcu:D (1.85) BS01 SAH N/A N/A A0A1W6R556 39121999
    902405 9fcx:A (1.8) BS01 SAH N/A N/A A0A1W6R556 39121999
    902406 9fcx:B (1.8) BS01 SAH N/A N/A A0A1W6R556 39121999
    902407 9fcy:A (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    902408 9fcy:A (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    902409 9fcy:B (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    902410 9fcy:B (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    902411 9fcy:C (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    902412 9fcy:C (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    902413 9fcy:D (1.85) BS01 ADE N/A N/A A0A1W6R556 39121999
    902414 9fcy:D (1.85) BS02 CA N/A N/A A0A1W6R556 39121999
    902415 9fd3:A (1.4) BS01 SAH N/A N/A A0A1W6R556 39121999
    902416 9fd3:A (1.4) BS02 CA N/A N/A A0A1W6R556 39121999
    902417 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902418 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902419 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902420 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902421 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902422 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902423 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902424 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    902425 9fdi:A (1.41) BS01 A1IB1 N/A N/A P04062 38932616
    902426 9fdi:A (1.41) BS02 A1IB1 N/A N/A P04062 38932616
    902427 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    902428 9fdj:B (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902429 9fdj:B (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902430 9fdj:B (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902431 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    902432 9fdj:D (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902433 9fdj:D (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902434 9fdj:D (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902435 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    902436 9fdk:B (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902437 9fdk:B (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902438 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    902439 9fdk:D (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902440 9fdk:D (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902441 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    902442 9fdv:B (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902443 9fdv:B (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902444 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    902445 9fdv:D (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902446 9fdv:D (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902447 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    902448 9fe0:B (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902449 9fe0:B (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902450 9fe0:B (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    902451 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    902452 9fe0:D (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902453 9fe0:D (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902454 9fe0:D (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    902455 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    902456 9fe5:B (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902457 9fe5:B (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902458 9fe5:B (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902459 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    902460 9fe5:D (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902461 9fe5:D (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902462 9fe5:D (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902463 9fe6:B (1.875) BS01 peptide N/A N/A A0A7C5VFX3 N/A
    902464 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    902465 9fe7:B (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902466 9fe7:B (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902467 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    902468 9fe7:D (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902469 9fe7:D (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902470 9fe8:A (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    902471 9fe8:B (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902472 9fe8:B (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902473 9fe8:C (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    902474 9fe8:D (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902475 9fe8:D (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902476 9fea:A (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    902477 9fea:B (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902478 9fea:B (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902479 9fea:B (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    902480 9fea:C (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    902481 9fea:D (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902482 9fea:D (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902483 9fea:D (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    902484 9feb:A (1.698) BS01 NAP N/A N/A A0A7C5VFX3 N/A
    902485 9feb:B (1.698) BS01 NAP N/A N/A A0A7C5VFX3 N/A
    902486 9feb:C (1.698) BS01 NAP N/A N/A A0A7C5VFX3 N/A
    902487 9feb:D (1.698) BS01 peptide N/A N/A A0A7C5VFX3 N/A
    902488 9feb:D (1.698) BS02 NAP N/A N/A A0A7C5VFX3 N/A
    902489 9feh:A (1.99) BS01 A1IB6 N/A N/A P0DTD1
    P41212    		 39188530
    902490 9feh:A (1.99) BS02 ZN N/A N/A P0DTD1
    P41212    		 39188530
    902491 9fek:A (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902492 9fek:B (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902493 9fek:C (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902494 9fek:D (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902495 9fek:E (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902496 9fek:F (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902497 9fek:G (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902498 9fek:H (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902499 9fek:I (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902500 9fek:J (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902501 9fek:K (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902502 9fek:L (1.58) BS01 MN N/A N/A A0A0S4KUT0 39143220
    902503 9fet:A (2.4) BS01 REB N/A N/A Q86Y07 N/A
    902504 9ffb:B (3.59) BS01 dna N/A GO:0005515 ... B0I564 N/A
    902505 9ffb:B (3.59) BS02 dna N/A GO:0005515 ... B0I564 N/A
    902506 9ffd:A (1.75) BS01 NAP N/A N/A P42330 39140045
    902507 9ffd:A (1.75) BS02 A1ICG N/A N/A P42330 39140045
    902508 9ffd:B (1.75) BS01 NAP N/A N/A P42330 39140045
    902509 9ffd:B (1.75) BS02 A1ICG N/A N/A P42330 39140045
    902510 9fff:B (3.68) BS01 dna N/A GO:0005515 ... B0I564 N/A
    902511 9fgo:A (1.43) BS01 ZN N/A N/A E5L2F2 N/A
    902512 9fgp:A (1.49) BS01 ZN ? N/A Q6V702 N/A
    902513 9fgp:B (1.49) BS01 ZN ? N/A Q6V702 N/A
    902514 9fgq:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    902515 9fgq:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    902516 9fgq:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    902517 9fgq:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    902518 9fgq:C (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    902519 9fgq:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    902520 9fgq:C (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    902521 9fgq:D (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    902522 9fgq:D (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    902523 9fgq:D (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    902524 9fgq:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    902525 9fgq:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    902526 9fgq:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    902527 9fgq:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    902528 9fgq:G (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    902529 9fgq:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    902530 9fgq:G (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    902531 9fgq:H (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    902532 9fgq:H (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    902533 9fgq:H (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    902534 9fh9:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    902535 9fh9:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    902536 9fh9:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    902537 9fh9:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    902538 9fh9:C (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    902539 9fh9:C (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    902540 9fh9:C (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    902541 9fh9:D (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    902542 9fh9:D (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    902543 9fh9:D (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    902544 9fh9:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    902545 9fh9:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    902546 9fh9:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    902547 9fh9:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    902548 9fh9:G (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    902549 9fh9:G (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    902550 9fh9:G (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    902551 9fh9:H (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    902552 9fh9:H (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    902553 9fh9:H (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    902554 9fhd:A (1.845) BS01 A1ICK N/A N/A P50053 39179180
    902555 9fhd:B (1.845) BS01 A1ICK N/A N/A P50053 39179180
    902556 9fhe:A (2.313) BS01 A1ICK N/A N/A P50053 39179180
    902557 9fhe:B (2.313) BS01 A1ICK N/A N/A P50053 39179180
    902558 9fif:A (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    902559 9fif:B (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902560 9fif:B (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902561 9fif:B (1.77) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902562 9fif:C (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    902563 9fif:D (1.77) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902564 9fif:D (1.77) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902565 9fih:A (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    902566 9fih:B (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902567 9fih:B (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902568 9fih:B (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902569 9fih:C (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    902570 9fih:D (2.08) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902571 9fih:D (2.08) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902572 9fih:D (2.08) BS03 NAI N/A GO:0046872 ... O66841 38960077
    902573 9fii:A (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    902574 9fii:B (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902575 9fii:B (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902576 9fii:C (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    902577 9fii:D (2.5) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902578 9fii:D (2.5) BS02 FMN N/A GO:0046872 ... O66841 38960077
    902579 9fij:A (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    902580 9fij:B (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902581 9fij:B (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902582 9fij:C (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    902583 9fij:D (2.35) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902584 9fij:D (2.35) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902585 9fil:A (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    902586 9fil:B (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902587 9fil:B (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902588 9fil:B (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    902589 9fil:C (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    902590 9fil:D (2.54) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    902591 9fil:D (2.54) BS02 FNR N/A GO:0046872 ... O66841 38960077
    902592 9fil:D (2.54) BS03 NAD N/A GO:0046872 ... O66841 38960077
    902593 9fj3:A (1.4) BS01 peptide N/A N/A P0CG48 N/A
    902594 9fj3:D (1.4) BS01 peptide N/A N/A P0CG48 N/A
    902595 9fj4:A (1.54) BS01 peptide N/A N/A P0CG48 N/A
    902596 9fjc:1 (2.15) BS01 peptide N/A N/A P08291 38978565
    902597 9fjc:3 (2.15) BS01 peptide N/A N/A P08291 38978565
    902598 9fjl:A (3.1) BS01 ZN N/A N/A A0A0U2WS94 N/A
    902599 9fjm:A (3.65) BS01 peptide N/A N/A P60709 N/A
    902600 9fjm:A (3.65) BS02 ADP N/A N/A P60709 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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