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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    902201 9f6d:A (3.6) BS05 MG N/A N/A Q07864 39112807
    902202 9f6e:A (3.74) BS01 dna N/A N/A Q07864 39112807
    902203 9f6e:A (3.74) BS02 dna N/A N/A Q07864 39112807
    902204 9f6e:A (3.74) BS03 SF4 N/A N/A Q07864 39112807
    902205 9f6e:A (3.74) BS04 DDS N/A N/A Q07864 39112807
    902206 9f6f:A (3.75) BS01 dna N/A N/A Q07864 39112807
    902207 9f6f:A (3.75) BS02 dna N/A N/A Q07864 39112807
    902208 9f6f:A (3.75) BS03 SF4 N/A N/A Q07864 39112807
    902209 9f6f:A (3.75) BS04 DDS N/A N/A Q07864 39112807
    902210 9f6i:A (3.3) BS01 dna N/A N/A Q07864 39112807
    902211 9f6i:A (3.3) BS02 dna N/A N/A Q07864 39112807
    902212 9f6i:A (3.3) BS03 SF4 N/A N/A Q07864 39112807
    902213 9f6i:A (3.3) BS04 DDS N/A N/A Q07864 39112807
    902214 9f6i:A (3.3) BS05 CA N/A N/A Q07864 39112807
    902215 9f6j:A (3.9) BS01 dna N/A N/A Q07864 39112807
    902216 9f6j:A (3.9) BS02 dna N/A N/A Q07864 39112807
    902217 9f6j:A (3.9) BS03 SF4 N/A N/A Q07864 39112807
    902218 9f6k:A (4.2) BS01 dna N/A N/A Q07864 39112807
    902219 9f6k:A (4.2) BS02 SF4 N/A N/A Q07864 39112807
    902220 9f6l:A (3.9) BS01 dna N/A N/A Q07864 39112807
    902221 9f6l:A (3.9) BS02 dna N/A N/A Q07864 39112807
    902222 9f6l:A (3.9) BS03 SF4 N/A N/A Q07864 39112807
    902223 9f6l:A (3.9) BS04 CA N/A N/A Q07864 39112807
    902224 9f6l:A (3.9) BS05 CA N/A N/A Q07864 39112807
    902225 9f7f:A (1.55) BS01 WNM ? GO:0003676 ... P09651 N/A
    902226 9f7h:A (1.43) BS01 JFM ? GO:0003676 ... P09651 N/A
    902227 9f7k:A (1.8) BS01 GSH N/A N/A Q7KK90 39062472
    902228 9f7k:A (1.8) BS02 GS8 N/A N/A Q7KK90 39062472
    902229 9f7k:B (1.8) BS01 GSH N/A N/A Q7KK90 39062472
    902230 9f7k:B (1.8) BS02 GS8 N/A N/A Q7KK90 39062472
    902231 9f7w:A (1.25) BS01 peptide N/A N/A P37231 38927044
    902232 9f7w:A (1.25) BS02 2OH N/A N/A P37231 38927044
    902233 9f7w:A (1.25) BS03 2OH N/A N/A P37231 38927044
    902234 9f7x:A (1.63) BS01 peptide N/A N/A P37231 38927044
    902235 9f7x:A (1.63) BS02 H3W N/A N/A P37231 38927044
    902236 9f8g:A (2.2) BS01 GTP N/A N/A P81947 39118608
    902237 9f8g:A (2.2) BS02 CA N/A N/A P81947 39118608
    902238 9f8g:B (2.2) BS01 GTP N/A N/A Q6B856 39118608
    902239 9f8g:B (2.2) BS02 A1IBN N/A N/A Q6B856 39118608
    902240 9f8x:A (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    902241 9f8x:A (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    902242 9f8x:A (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902243 9f8x:A (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902244 9f8x:B (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    902245 9f8x:B (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    902246 9f8x:B (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902247 9f8x:B (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902248 9f8x:C (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    902249 9f8x:C (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    902250 9f8x:C (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902251 9f8x:C (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902252 9f8x:D (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    902253 9f8x:D (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    902254 9f8x:D (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902255 9f8x:D (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    902256 9f99:A (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    902257 9f99:A (2.803) BS02 MG N/A N/A Q96NY9 39015284
    902258 9f99:A (2.803) BS03 MG N/A N/A Q96NY9 39015284
    902259 9f99:C (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    902260 9f99:C (2.803) BS02 MG N/A N/A Q96NY9 39015284
    902261 9f99:C (2.803) BS03 MG N/A N/A Q96NY9 39015284
    902262 9f99:E (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    902263 9f99:E (2.803) BS02 A1IA5 N/A N/A Q96NY9 39015284
    902264 9f99:E (2.803) BS03 MG N/A N/A Q96NY9 39015284
    902265 9f99:E (2.803) BS04 MG N/A N/A Q96NY9 39015284
    902266 9f99:G (2.803) BS01 A1IA5 N/A N/A Q96NY9 39015284
    902267 9f99:G (2.803) BS02 A1IA5 N/A N/A Q96NY9 39015284
    902268 9f99:G (2.803) BS03 MG N/A N/A Q96NY9 39015284
    902269 9f9a:A (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    902270 9f9a:A (2.911) BS02 MG N/A N/A Q96NY9 39015284
    902271 9f9a:A (2.911) BS03 MG N/A N/A Q96NY9 39015284
    902272 9f9a:C (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    902273 9f9a:C (2.911) BS02 MG N/A N/A Q96NY9 39015284
    902274 9f9a:C (2.911) BS03 MG N/A N/A Q96NY9 39015284
    902275 9f9a:E (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    902276 9f9a:E (2.911) BS02 A1IA6 N/A N/A Q96NY9 39015284
    902277 9f9a:E (2.911) BS03 MG N/A N/A Q96NY9 39015284
    902278 9f9a:E (2.911) BS04 MG N/A N/A Q96NY9 39015284
    902279 9f9a:G (2.911) BS01 A1IA6 N/A N/A Q96NY9 39015284
    902280 9f9a:G (2.911) BS02 A1IA6 N/A N/A Q96NY9 39015284
    902281 9f9a:G (2.911) BS03 MG N/A N/A Q96NY9 39015284
    902282 9f9a:G (2.911) BS04 MG N/A N/A Q96NY9 39015284
    902283 9f9k:A (2.728) BS01 MG N/A N/A Q96NY9 39015284
    902284 9f9k:A (2.728) BS02 A1IA7 N/A N/A Q96NY9 39015284
    902285 9f9k:A (2.728) BS03 A1IA7 N/A N/A Q96NY9 39015284
    902286 9f9l:A (2.02) BS01 MG N/A N/A Q96NY9 39015284
    902287 9f9l:A (2.02) BS02 A1IA8 N/A N/A Q96NY9 39015284
    902288 9f9l:C (2.02) BS01 MG N/A N/A Q96NY9 39015284
    902289 9f9l:C (2.02) BS02 A1IA8 N/A N/A Q96NY9 39015284
    902290 9f9m:A (2.469) BS01 MG N/A N/A Q96NY9 39015284
    902291 9f9m:A (2.469) BS02 MG N/A N/A Q96NY9 39015284
    902292 9f9m:A (2.469) BS03 A1IA4 N/A N/A Q96NY9 39015284
    902293 9f9m:C (2.469) BS01 MG N/A N/A Q96NY9 39015284
    902294 9f9m:C (2.469) BS02 A1IA4 N/A N/A Q96NY9 39015284
    902295 9f9z:A (2.279) BS01 A1IBI N/A GO:0004336 ... P04062 38932616
    902296 9fa3:A (1.36) BS01 A1IBC N/A N/A P04062 38932616
    902297 9fa6:A (1.49) BS01 A1IBE N/A N/A P04062 38932616
    902298 9fa6:A (1.49) BS02 A1IBG N/A N/A P04062 38932616
    902299 9fa6:A (1.49) BS03 A1IBE N/A N/A P04062 38932616
    902300 9fad:A (1.8) BS01 A1IBD N/A N/A P04062 38932616
    902301 9fal:A (1.39) BS01 A1IBQ N/A N/A P04062 38932616
    902302 9fal:A (1.39) BS02 BAQ N/A N/A P04062 38932616
    902303 9fay:A (1.4) BS01 A1IBR N/A N/A P04062 38932616
    902304 9faz:A (1.63) BS01 A1IBP N/A N/A P04062 38932616
    902305 9fb2:A (1.14) BS01 A1IBO N/A N/A P04062 38932616
    902306 9fb8:A (1.727) BS01 ANP N/A N/A Q9H611 N/A
    902307 9fb8:A (1.727) BS02 O0J N/A N/A Q9H611 N/A
    902308 9fb8:A (1.727) BS03 O0J N/A N/A Q9H611 N/A
    902309 9fbf:A (3.01) BS01 peptide N/A N/A Q9PTN2 38858308
    902310 9fbf:A (3.01) BS02 A1IBM N/A N/A Q9PTN2 38858308
    902311 9fbv:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    902312 9fbv:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    902313 9fbv:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    902314 9fbv:3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 38826346
    902315 9fbv:3 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 38826346
    902316 9fbv:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    902317 9fbv:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 38826346
    902318 9fbv:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 38826346
    902319 9fbv:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    902320 9fbv:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    902321 9fbv:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    902322 9fbv:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    902323 9fbv:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    902324 9fbv:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    902325 9fbv:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    902326 9fbv:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    902327 9fbv:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    902328 9fbv:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    902329 9fbv:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    902330 9fbv:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    902331 9fbv:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    902332 9fbv:M (2.4) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    902333 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    902334 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    902335 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    902336 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    902337 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    902338 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    902339 9fbv:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    902340 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    902341 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    902342 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    902343 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    902344 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    902345 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    902346 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    902347 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    902348 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    902349 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    902350 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    902351 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    902352 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    902353 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    902354 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    902355 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    902356 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    902357 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    902358 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    902359 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    902360 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    902361 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    902362 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    902363 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    902364 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    902365 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    902366 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    902367 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    902368 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    902369 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    902370 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    902371 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    902372 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    902373 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    902374 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    902375 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    902376 9fbx:A (1.602) BS01 A1IBV N/A N/A P25440 38866424
    902377 9fby:A (1.853) BS01 A1IB5 N/A N/A O60885 38866424
    902378 9fcd:A (1.5) BS01 SAH N/A N/A A0A1W6R556 39121999
    902379 9fcd:A (1.5) BS02 CA N/A N/A A0A1W6R556 39121999
    902380 9fce:A (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    902381 9fce:A (1.95) BS02 CA N/A N/A A0A1W6R583 39121999
    902382 9fce:A (1.95) BS03 BU3 N/A N/A A0A1W6R583 39121999
    902383 9fce:B (1.95) BS01 SAM N/A N/A A0A1W6R583 39121999
    902384 9fce:B (1.95) BS02 CA N/A N/A A0A1W6R583 39121999
    902385 9fcf:A (2.36) BS01 GUO N/A N/A G7IFI7 39186852
    902386 9fcf:A (2.36) BS02 NA N/A N/A G7IFI7 39186852
    902387 9fcg:A (1.54) BS01 2ER N/A N/A G7IFI7 39186852
    902388 9fcg:A (1.54) BS02 2ER N/A N/A G7IFI7 39186852
    902389 9fcg:A (1.54) BS03 NA N/A N/A G7IFI7 39186852
    902390 9fcg:A (1.54) BS04 NA N/A N/A G7IFI7 39186852
    902391 9fci:D (3.2) BS01 ZN N/A N/A O94782 39190802
    902392 9fci:D (3.2) BS02 A1IB8 N/A N/A O94782 39190802
    902393 9fcj:D (2.7) BS01 ZN N/A N/A O94782 39190802
    902394 9fcj:D (2.7) BS02 JDA N/A N/A O94782 39190802
    902395 9fcl:A (1.75) BS01 SAM N/A N/A A0A1W6R556 39121999
    902396 9fcl:A (1.75) BS02 CA N/A N/A A0A1W6R556 39121999
    902397 9fcq:A (1.4) BS01 SAH N/A N/A A0A1W6R556 39121999
    902398 9fcq:A (1.4) BS02 CA N/A N/A A0A1W6R556 39121999
    902399 9fcs:A (1.6) BS01 SAH N/A N/A A0A1W6R556 39121999
    902400 9fcs:B (1.6) BS01 SAH N/A N/A A0A1W6R556 39121999
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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