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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    901801 9f1c:AF (3.78) BS01 rna N/A N/A G1SJB4 39169182
    901802 9f1c:AG (3.78) BS01 rna N/A N/A G1U7M4 39169182
    901803 9f1c:AG (3.78) BS02 ZN N/A N/A G1U7M4 39169182
    901804 9f1c:AZ (3.78) BS01 rna N/A N/A G1TLT8 39169182
    901805 9f1c:Aa (3.78) BS01 rna N/A N/A G1SS70 39169182
    901806 9f1c:Ab (3.78) BS01 rna N/A N/A N/A 39169182
    901807 9f1c:Ac (3.78) BS01 rna N/A N/A G1TNM3 39169182
    901808 9f1c:Ad (3.78) BS01 rna N/A N/A G1TK17 39169182
    901809 9f1c:Ae (3.78) BS01 rna N/A N/A G1TFM5 39169182
    901810 9f1c:Af (3.78) BS01 rna N/A N/A G1TM55 39169182
    901811 9f1c:Ag (3.78) BS01 rna N/A N/A G1SVB0 39169182
    901812 9f1c:Ah (3.78) BS01 rna N/A N/A G1TJW1 39169182
    901813 9f1c:Ah (3.78) BS02 rna N/A N/A G1TJW1 39169182
    901814 9f1c:Ai (3.78) BS01 rna N/A N/A B7NZS8 39169182
    901815 9f1c:Aj (3.78) BS01 rna N/A N/A G1TPV3 39169182
    901816 9f1c:Ak (3.78) BS01 rna N/A N/A G1TRM4 39169182
    901817 9f1c:Al (3.78) BS01 rna N/A N/A G1SFR8 39169182
    901818 9f1c:Am (3.78) BS01 rna N/A N/A G1SP51 39169182
    901819 9f1c:Am (3.78) BS02 rna N/A N/A G1SP51 39169182
    901820 9f1c:An (3.78) BS01 rna N/A N/A A0AAA9WYR1 39169182
    901821 9f1c:Ao (3.78) BS01 rna N/A N/A G1U0Q2 39169182
    901822 9f1c:Ao (3.78) BS02 rna N/A N/A G1U0Q2 39169182
    901823 9f1c:Ap (3.78) BS01 rna N/A N/A G1SGX4 39169182
    901824 9f1c:Aq (3.78) BS01 rna N/A N/A G1TU13 39169182
    901825 9f1c:Ar (3.78) BS01 rna N/A N/A G1TPG3 39169182
    901826 9f1c:As (3.78) BS01 rna N/A N/A G1TN62 39169182
    901827 9f1c:At (3.78) BS01 rna N/A N/A G1SIZ2 39169182
    901828 9f1c:Av (3.78) BS01 rna N/A N/A G1TG89 39169182
    901829 9f1c:Aw (3.78) BS01 rna N/A N/A G1SZ47 39169182
    901830 9f1c:Ax (3.78) BS01 rna N/A N/A G1T3D8 39169182
    901831 9f1c:Ay (3.78) BS01 rna N/A N/A G1TDB3 39169182
    901832 9f1c:Ay (3.78) BS02 rna N/A N/A G1TDB3 39169182
    901833 9f1c:B (3.78) BS01 rna N/A N/A G1SZF4 39169182
    901834 9f1c:B (3.78) BS02 rna N/A N/A G1SZF4 39169182
    901835 9f1c:B (3.78) BS03 GTP N/A N/A G1SZF4 39169182
    901836 9f1c:BA (3.78) BS01 rna N/A N/A G1TT27 39169182
    901837 9f1c:BA (3.78) BS02 rna N/A N/A G1TT27 39169182
    901838 9f1c:BB (3.78) BS01 rna N/A N/A G1TL06 39169182
    901839 9f1c:BC (3.78) BS01 rna N/A N/A G1SVW5 39169182
    901840 9f1c:BC (3.78) BS02 rna N/A N/A G1SVW5 39169182
    901841 9f1c:BE (3.78) BS01 rna N/A N/A G1SKF7 39169182
    901842 9f1c:BF (3.78) BS01 rna N/A N/A G1TUB1 39169182
    901843 9f1c:BF (3.78) BS02 rna N/A N/A G1TUB1 39169182
    901844 9f1c:BG (3.78) BS01 rna N/A N/A N/A 39169182
    901845 9f1c:BG (3.78) BS02 rna N/A N/A N/A 39169182
    901846 9f1c:BH (3.78) BS01 rna N/A N/A G1SWI6 39169182
    901847 9f1c:BI (3.78) BS01 rna N/A N/A B7NZQ2 39169182
    901848 9f1c:BI (3.78) BS02 rna N/A N/A B7NZQ2 39169182
    901849 9f1c:BI (3.78) BS03 rna N/A N/A B7NZQ2 39169182
    901850 9f1c:BJ (3.78) BS01 rna N/A N/A G1TUB8 39169182
    901851 9f1c:BJ (3.78) BS02 rna N/A N/A G1TUB8 39169182
    901852 9f1c:BJ (3.78) BS03 rna N/A N/A G1TUB8 39169182
    901853 9f1c:BK (3.78) BS01 rna N/A N/A N/A 39169182
    901854 9f1c:BK (3.78) BS02 rna N/A N/A N/A 39169182
    901855 9f1c:BL (3.78) BS01 rna N/A N/A G1TKB3 39169182
    901856 9f1c:BL (3.78) BS02 rna N/A N/A G1TKB3 39169182
    901857 9f1c:BM (3.78) BS01 rna N/A N/A G1SZ12 39169182
    901858 9f1c:BN (3.78) BS01 rna N/A N/A G1T0C1 39169182
    901859 9f1c:BN (3.78) BS02 rna N/A N/A G1T0C1 39169182
    901860 9f1c:BO (3.78) BS01 rna N/A N/A G1TVS8 39169182
    901861 9f1c:BP (3.78) BS01 rna N/A N/A G1SCJ6 39169182
    901862 9f1c:BP (3.78) BS02 rna N/A N/A G1SCJ6 39169182
    901863 9f1c:BQ (3.78) BS01 rna N/A N/A N/A 39169182
    901864 9f1c:BR (3.78) BS01 rna N/A N/A G1TJR3 39169182
    901865 9f1c:BR (3.78) BS02 rna N/A N/A G1TJR3 39169182
    901866 9f1c:BS (3.78) BS01 rna N/A N/A G1TTY7 39169182
    901867 9f1c:BS (3.78) BS02 rna N/A N/A G1TTY7 39169182
    901868 9f1c:BT (3.78) BS01 rna N/A N/A G1SHQ2 39169182
    901869 9f1c:BT (3.78) BS02 rna N/A N/A G1SHQ2 39169182
    901870 9f1c:BU (3.78) BS01 rna N/A N/A G1TSG1 39169182
    901871 9f1c:BV (3.78) BS01 rna N/A N/A G1T6D1 39169182
    901872 9f1c:BW (3.78) BS01 rna N/A N/A G1SE28 39169182
    901873 9f1c:BW (3.78) BS02 rna N/A N/A G1SE28 39169182
    901874 9f1c:BX (3.78) BS01 rna N/A N/A G1SE76 39169182
    901875 9f1c:BX (3.78) BS02 rna N/A N/A G1SE76 39169182
    901876 9f1c:BY (3.78) BS01 rna N/A N/A G1SQH0 39169182
    901877 9f1c:BY (3.78) BS02 rna N/A N/A G1SQH0 39169182
    901878 9f1c:BZ (3.78) BS01 rna N/A N/A G1TXF6 39169182
    901879 9f1c:Ba (3.78) BS01 rna N/A N/A G1SNY0 39169182
    901880 9f1c:Bb (3.78) BS01 rna N/A N/A G1SGR6 39169182
    901881 9f1c:Bc (3.78) BS01 rna N/A N/A G1TDL2 39169182
    901882 9f1c:Bd (3.78) BS01 rna N/A N/A G1SHG0 39169182
    901883 9f1c:Be (3.78) BS01 rna N/A N/A A0AAA9WVN6 39169182
    901884 9f1c:Bf (3.78) BS01 rna N/A N/A G1SF08 39169182
    901885 9f1c:Bg (3.78) BS01 rna N/A N/A G1TXG5 39169182
    901886 9f1c:Bg (3.78) BS02 ZN N/A N/A G1TXG5 39169182
    901887 9f1c:Bh (3.78) BS01 rna N/A N/A G1SIT5 39169182
    901888 9f1c:Bh (3.78) BS02 rna N/A N/A G1SIT5 39169182
    901889 9f1c:Bi (3.78) BS01 rna N/A N/A G1TTQ5 39169182
    901890 9f1c:Bj (3.78) BS01 rna N/A N/A U3KPD5 39169182
    901891 9f1c:Bj (3.78) BS02 rna N/A N/A U3KPD5 39169182
    901892 9f1c:Bj (3.78) BS03 ZN N/A N/A U3KPD5 39169182
    901893 9f1c:Bk (3.78) BS01 rna N/A N/A G1U001 39169182
    901894 9f1c:Bl (3.78) BS01 rna N/A N/A G1TTN1 39169182
    901895 9f1c:Bl (3.78) BS02 rna N/A N/A G1TTN1 39169182
    901896 9f1c:Bm (3.78) BS01 rna N/A N/A P0DXC2 39169182
    901897 9f1c:Bm (3.78) BS02 ZN N/A N/A P0DXC2 39169182
    901898 9f1c:Bo (3.78) BS01 rna N/A N/A A0AAA9WX15 39169182
    901899 9f1c:Bo (3.78) BS02 ZN N/A N/A A0AAA9WX15 39169182
    901900 9f1c:Bp (3.78) BS01 rna N/A N/A G1SY53 39169182
    901901 9f1c:Bp (3.78) BS02 ZN N/A N/A G1SY53 39169182
    901902 9f1c:Br (3.78) BS01 rna N/A N/A G1U7L1 39169182
    901903 9f1c:Bs (3.78) BS01 rna N/A N/A G1SPK4 39169182
    901904 9f1c:Bt (3.78) BS01 rna N/A N/A G1SMR7 39169182
    901905 9f1c:Cu (3.78) BS01 rna N/A N/A P20290 39169182
    901906 9f1c:DB (3.78) BS01 rna N/A N/A Q9BXJ9 39169182
    901907 9f1c:DB (3.78) BS02 IHP N/A N/A Q9BXJ9 39169182
    901908 9f1d:AA (3.26) BS01 rna N/A N/A G1TZ76 39169182
    901909 9f1d:AB (3.26) BS01 rna N/A N/A G1TIB4 39169182
    901910 9f1d:AC (3.26) BS01 rna N/A N/A G1SK22 39169182
    901911 9f1d:AC (3.26) BS02 ZN N/A N/A G1SK22 39169182
    901912 9f1d:AD (3.26) BS01 rna N/A N/A G1T8A2 39169182
    901913 9f1d:AE (3.26) BS01 rna N/A N/A N/A 39169182
    901914 9f1d:AE (3.26) BS02 ZN N/A N/A N/A 39169182
    901915 9f1d:AF (3.26) BS01 rna N/A N/A G1SJB4 39169182
    901916 9f1d:AG (3.26) BS01 rna N/A N/A G1U7M4 39169182
    901917 9f1d:AG (3.26) BS02 ZN N/A N/A G1U7M4 39169182
    901918 9f1d:AZ (3.26) BS01 rna N/A N/A G1TLT8 39169182
    901919 9f1d:Aa (3.26) BS01 rna N/A N/A G1SS70 39169182
    901920 9f1d:Ab (3.26) BS01 rna N/A N/A N/A 39169182
    901921 9f1d:Ac (3.26) BS01 rna N/A N/A G1TNM3 39169182
    901922 9f1d:Ad (3.26) BS01 rna N/A N/A G1TK17 39169182
    901923 9f1d:Ae (3.26) BS01 rna N/A N/A G1TFM5 39169182
    901924 9f1d:Af (3.26) BS01 rna N/A N/A G1TM55 39169182
    901925 9f1d:Ag (3.26) BS01 rna N/A N/A G1SVB0 39169182
    901926 9f1d:Ah (3.26) BS01 rna N/A N/A G1TJW1 39169182
    901927 9f1d:Ah (3.26) BS02 rna N/A N/A G1TJW1 39169182
    901928 9f1d:Ai (3.26) BS01 rna N/A N/A B7NZS8 39169182
    901929 9f1d:Aj (3.26) BS01 rna N/A N/A G1TPV3 39169182
    901930 9f1d:Ak (3.26) BS01 rna N/A N/A G1TRM4 39169182
    901931 9f1d:Al (3.26) BS01 rna N/A N/A G1SFR8 39169182
    901932 9f1d:Am (3.26) BS01 rna N/A N/A G1SP51 39169182
    901933 9f1d:Am (3.26) BS02 rna N/A N/A G1SP51 39169182
    901934 9f1d:An (3.26) BS01 rna N/A N/A A0AAA9WYR1 39169182
    901935 9f1d:Ao (3.26) BS01 rna N/A N/A G1U0Q2 39169182
    901936 9f1d:Ao (3.26) BS02 rna N/A N/A G1U0Q2 39169182
    901937 9f1d:Ap (3.26) BS01 rna N/A N/A G1SGX4 39169182
    901938 9f1d:Aq (3.26) BS01 rna N/A N/A G1TU13 39169182
    901939 9f1d:Ar (3.26) BS01 rna N/A N/A G1TPG3 39169182
    901940 9f1d:As (3.26) BS01 rna N/A N/A G1TN62 39169182
    901941 9f1d:At (3.26) BS01 rna N/A N/A G1SIZ2 39169182
    901942 9f1d:Av (3.26) BS01 rna N/A N/A G1TG89 39169182
    901943 9f1d:Aw (3.26) BS01 rna N/A N/A G1SZ47 39169182
    901944 9f1d:Ax (3.26) BS01 rna N/A N/A G1T3D8 39169182
    901945 9f1d:Ay (3.26) BS01 rna N/A N/A G1TDB3 39169182
    901946 9f1d:Ay (3.26) BS02 rna N/A N/A G1TDB3 39169182
    901947 9f1d:B (3.26) BS01 rna N/A N/A G1SZF4 39169182
    901948 9f1d:B (3.26) BS02 rna N/A N/A G1SZF4 39169182
    901949 9f1d:B (3.26) BS03 GTP N/A N/A G1SZF4 39169182
    901950 9f1d:BA (3.26) BS01 rna N/A N/A G1TT27 39169182
    901951 9f1d:BA (3.26) BS02 rna N/A N/A G1TT27 39169182
    901952 9f1d:BB (3.26) BS01 rna N/A N/A G1TL06 39169182
    901953 9f1d:BC (3.26) BS01 rna N/A N/A G1SVW5 39169182
    901954 9f1d:BC (3.26) BS02 rna N/A N/A G1SVW5 39169182
    901955 9f1d:BE (3.26) BS01 rna N/A N/A G1SKF7 39169182
    901956 9f1d:BF (3.26) BS01 rna N/A N/A G1TUB1 39169182
    901957 9f1d:BF (3.26) BS02 rna N/A N/A G1TUB1 39169182
    901958 9f1d:BG (3.26) BS01 rna N/A N/A N/A 39169182
    901959 9f1d:BG (3.26) BS02 rna N/A N/A N/A 39169182
    901960 9f1d:BH (3.26) BS01 rna N/A N/A G1SWI6 39169182
    901961 9f1d:BI (3.26) BS01 rna N/A N/A B7NZQ2 39169182
    901962 9f1d:BI (3.26) BS02 rna N/A N/A B7NZQ2 39169182
    901963 9f1d:BI (3.26) BS03 rna N/A N/A B7NZQ2 39169182
    901964 9f1d:BJ (3.26) BS01 rna N/A N/A G1TUB8 39169182
    901965 9f1d:BJ (3.26) BS02 rna N/A N/A G1TUB8 39169182
    901966 9f1d:BJ (3.26) BS03 rna N/A N/A G1TUB8 39169182
    901967 9f1d:BL (3.26) BS01 rna N/A N/A G1TKB3 39169182
    901968 9f1d:BL (3.26) BS02 rna N/A N/A G1TKB3 39169182
    901969 9f1d:BM (3.26) BS01 rna N/A N/A G1SZ12 39169182
    901970 9f1d:BN (3.26) BS01 rna N/A N/A G1T0C1 39169182
    901971 9f1d:BN (3.26) BS02 rna N/A N/A G1T0C1 39169182
    901972 9f1d:BO (3.26) BS01 rna N/A N/A G1TVS8 39169182
    901973 9f1d:BP (3.26) BS01 rna N/A N/A G1SCJ6 39169182
    901974 9f1d:BP (3.26) BS02 rna N/A N/A G1SCJ6 39169182
    901975 9f1d:BQ (3.26) BS01 rna N/A N/A N/A 39169182
    901976 9f1d:BR (3.26) BS01 rna N/A N/A G1TJR3 39169182
    901977 9f1d:BR (3.26) BS02 rna N/A N/A G1TJR3 39169182
    901978 9f1d:BS (3.26) BS01 rna N/A N/A G1TTY7 39169182
    901979 9f1d:BS (3.26) BS02 rna N/A N/A G1TTY7 39169182
    901980 9f1d:BT (3.26) BS01 rna N/A N/A G1SHQ2 39169182
    901981 9f1d:BT (3.26) BS02 rna N/A N/A G1SHQ2 39169182
    901982 9f1d:BU (3.26) BS01 rna N/A N/A G1TSG1 39169182
    901983 9f1d:BV (3.26) BS01 rna N/A N/A G1T6D1 39169182
    901984 9f1d:BW (3.26) BS01 rna N/A N/A G1SE28 39169182
    901985 9f1d:BW (3.26) BS02 rna N/A N/A G1SE28 39169182
    901986 9f1d:BX (3.26) BS01 rna N/A N/A G1SE76 39169182
    901987 9f1d:BX (3.26) BS02 rna N/A N/A G1SE76 39169182
    901988 9f1d:BY (3.26) BS01 rna N/A N/A G1SQH0 39169182
    901989 9f1d:BY (3.26) BS02 rna N/A N/A G1SQH0 39169182
    901990 9f1d:BZ (3.26) BS01 rna N/A N/A G1TXF6 39169182
    901991 9f1d:Ba (3.26) BS01 rna N/A N/A G1SNY0 39169182
    901992 9f1d:Bb (3.26) BS01 rna N/A N/A G1SGR6 39169182
    901993 9f1d:Bc (3.26) BS01 rna N/A N/A G1TDL2 39169182
    901994 9f1d:Bd (3.26) BS01 rna N/A N/A G1SHG0 39169182
    901995 9f1d:Be (3.26) BS01 rna N/A N/A A0AAA9WVN6 39169182
    901996 9f1d:Bf (3.26) BS01 rna N/A N/A G1SF08 39169182
    901997 9f1d:Bg (3.26) BS01 rna N/A N/A G1TXG5 39169182
    901998 9f1d:Bg (3.26) BS02 ZN N/A N/A G1TXG5 39169182
    901999 9f1d:Bh (3.26) BS01 rna N/A N/A G1SIT5 39169182
    902000 9f1d:Bh (3.26) BS02 rna N/A N/A G1SIT5 39169182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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