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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899201 9bdn:AL39 (3.1) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    899202 9bdn:AL39 (3.1) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    899203 9bdn:AL40 (3.1) BS01 rna N/A N/A P0DXC2 38718836
    899204 9bdn:AL42 (3.1) BS01 rna N/A N/A A0A5F9D391 38718836
    899205 9bdn:AL42 (3.1) BS02 rna N/A N/A A0A5F9D391 38718836
    899206 9bdn:AL42 (3.1) BS03 rna N/A N/A A0A5F9D391 38718836
    899207 9bdn:AL43 (3.1) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    899208 9bdn:ALNW (3.1) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    899209 9bdn:ALP0 (3.1) BS01 rna N/A N/A G1SPK4 38718836
    899210 9bdn:ANG (3.1) BS01 rna N/A N/A P03950 38718836
    899211 9bdn:ANG (3.1) BS02 rna N/A N/A P03950 38718836
    899212 9bdn:ANG (3.1) BS03 rna N/A N/A P03950 38718836
    899213 9bdn:ANG (3.1) BS04 rna N/A N/A P03950 38718836
    899214 9bdn:ARAC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    899215 9bdn:AS00 (3.1) BS01 rna N/A N/A G1TJH8 38718836
    899216 9bdn:AS01 (3.1) BS01 rna N/A N/A G1SS70 38718836
    899217 9bdn:AS02 (3.1) BS01 rna N/A N/A O18789 38718836
    899218 9bdn:AS03 (3.1) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    899219 9bdn:AS04 (3.1) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    899220 9bdn:AS05 (3.1) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    899221 9bdn:AS06 (3.1) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    899222 9bdn:AS07 (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    899223 9bdn:AS08 (3.1) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    899224 9bdn:AS08 (3.1) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    899225 9bdn:AS09 (3.1) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    899226 9bdn:AS10 (3.1) BS01 rna N/A N/A G1TPV3 38718836
    899227 9bdn:AS11 (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    899228 9bdn:AS12 (3.1) BS01 rna N/A N/A G1SFR8 38718836
    899229 9bdn:AS13 (3.1) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    899230 9bdn:AS14 (3.1) BS01 rna N/A N/A G1T1F0 38718836
    899231 9bdn:AS15 (3.1) BS01 rna N/A N/A G1U0Q2 38718836
    899232 9bdn:AS16 (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    899233 9bdn:AS17 (3.1) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    899234 9bdn:AS18 (3.1) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    899235 9bdn:AS19 (3.1) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    899236 9bdn:AS20 (3.1) BS01 rna N/A N/A G1SIZ2 38718836
    899237 9bdn:AS22 (3.1) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    899238 9bdn:AS23 (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    899239 9bdn:AS24 (3.1) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    899240 9bdn:AS25 (3.1) BS01 rna N/A N/A G1TDB3 38718836
    899241 9bdn:AS26 (3.1) BS01 rna N/A N/A G1TFE8 38718836
    899242 9bdn:AS27 (3.1) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    899243 9bdn:AS28 (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    899244 9bdn:AS29 (3.1) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    899245 9bdn:AS30 (3.1) BS01 rna N/A N/A G1T8A2 38718836
    899246 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    899247 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    899248 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    899249 9bdp:AL04 (3.7) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    899250 9bdp:AL04 (3.7) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    899251 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    899252 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    899253 9bdp:AL06 (3.7) BS01 rna N/A N/A G1SKF7 38718836
    899254 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    899255 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    899256 9bdp:AL08 (3.7) BS01 rna N/A N/A G1STW0 38718836
    899257 9bdp:AL08 (3.7) BS02 rna N/A N/A G1STW0 38718836
    899258 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    899259 9bdp:AL10 (3.7) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    899260 9bdp:AL10 (3.7) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    899261 9bdp:AL10 (3.7) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    899262 9bdp:AL11 (3.7) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    899263 9bdp:AL11 (3.7) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    899264 9bdp:AL11 (3.7) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    899265 9bdp:AL12 (3.7) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    899266 9bdp:AL12 (3.7) BS02 rna N/A GO:0003723 ... G1SMR7 38718836
    899267 9bdp:AL13 (3.7) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    899268 9bdp:AL13 (3.7) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    899269 9bdp:AL14 (3.7) BS01 rna N/A N/A G1SZ12 38718836
    899270 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    899271 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    899272 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    899273 9bdp:AL17 (3.7) BS01 rna N/A N/A G1SCJ6 38718836
    899274 9bdp:AL17 (3.7) BS02 rna N/A N/A G1SCJ6 38718836
    899275 9bdp:AL18 (3.7) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    899276 9bdp:AL19 (3.7) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    899277 9bdp:AL19 (3.7) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    899278 9bdp:AL20 (3.7) BS01 rna N/A N/A G1TTY7 38718836
    899279 9bdp:AL20 (3.7) BS02 rna N/A N/A G1TTY7 38718836
    899280 9bdp:AL21 (3.7) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    899281 9bdp:AL21 (3.7) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    899282 9bdp:AL22 (3.7) BS01 rna N/A N/A G1TSG1 38718836
    899283 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    899284 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    899285 9bdp:AL24 (3.7) BS01 rna N/A N/A G1SE28 38718836
    899286 9bdp:AL25 (3.7) BS01 rna N/A N/A G1SE76 38718836
    899287 9bdp:AL25 (3.7) BS02 rna N/A N/A G1SE76 38718836
    899288 9bdp:AL26 (3.7) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    899289 9bdp:AL26 (3.7) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    899290 9bdp:AL27 (3.7) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    899291 9bdp:AL28 (3.7) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    899292 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    899293 9bdp:AL30 (3.7) BS01 rna N/A N/A G1TDL2 38718836
    899294 9bdp:AL31 (3.7) BS01 rna N/A N/A G1SHG0 38718836
    899295 9bdp:AL32 (3.7) BS01 rna N/A GO:0005737 ... G1TUN8 38718836
    899296 9bdp:AL33 (3.7) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    899297 9bdp:AL34 (3.7) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    899298 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    899299 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    899300 9bdp:AL36 (3.7) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    899301 9bdp:AL37 (3.7) BS01 rna N/A N/A U3KPD5 38718836
    899302 9bdp:AL37 (3.7) BS02 rna N/A N/A U3KPD5 38718836
    899303 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    899304 9bdp:AL39 (3.7) BS01 rna N/A GO:0005840 ... G1TTN1 38718836
    899305 9bdp:AL39 (3.7) BS02 rna N/A GO:0005840 ... G1TTN1 38718836
    899306 9bdp:AL40 (3.7) BS01 rna N/A N/A P0DXC2 38718836
    899307 9bdp:AL42 (3.7) BS01 rna N/A N/A A0A5F9D391 38718836
    899308 9bdp:AL42 (3.7) BS02 rna N/A N/A A0A5F9D391 38718836
    899309 9bdp:AL43 (3.7) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    899310 9bdp:ALNW (3.7) BS01 rna N/A GO:0005737 ... G1U7L1 38718836
    899311 9bdp:ALP0 (3.7) BS01 rna N/A N/A G1SPK4 38718836
    899312 9bdp:ANG (3.7) BS01 rna N/A N/A P03950 38718836
    899313 9bdp:ANG (3.7) BS02 rna N/A N/A P03950 38718836
    899314 9bdp:ANG (3.7) BS03 rna N/A N/A P03950 38718836
    899315 9bdp:ANG (3.7) BS04 rna N/A N/A P03950 38718836
    899316 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    899317 9bdp:AS00 (3.7) BS01 rna N/A N/A G1TJH8 38718836
    899318 9bdp:AS01 (3.7) BS01 rna N/A N/A G1SS70 38718836
    899319 9bdp:AS02 (3.7) BS01 rna N/A N/A O18789 38718836
    899320 9bdp:AS03 (3.7) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    899321 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    899322 9bdp:AS05 (3.7) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    899323 9bdp:AS06 (3.7) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    899324 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    899325 9bdp:AS08 (3.7) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    899326 9bdp:AS08 (3.7) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    899327 9bdp:AS09 (3.7) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    899328 9bdp:AS10 (3.7) BS01 rna N/A N/A G1TPV3 38718836
    899329 9bdp:AS11 (3.7) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    899330 9bdp:AS12 (3.7) BS01 rna N/A N/A G1SFR8 38718836
    899331 9bdp:AS13 (3.7) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    899332 9bdp:AS13 (3.7) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    899333 9bdp:AS14 (3.7) BS01 rna N/A N/A G1T1F0 38718836
    899334 9bdp:AS15 (3.7) BS01 rna N/A N/A G1U0Q2 38718836
    899335 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    899336 9bdp:AS17 (3.7) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    899337 9bdp:AS18 (3.7) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    899338 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    899339 9bdp:AS20 (3.7) BS01 rna N/A N/A G1SIZ2 38718836
    899340 9bdp:AS22 (3.7) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    899341 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    899342 9bdp:AS24 (3.7) BS01 rna N/A GO:0005840 ... G1T3D8 38718836
    899343 9bdp:AS25 (3.7) BS01 rna N/A N/A N/A 38718836
    899344 9bdp:AS26 (3.7) BS01 rna N/A N/A G1TFE8 38718836
    899345 9bdp:AS27 (3.7) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    899346 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    899347 9bdp:AS29 (3.7) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    899348 9bdp:AS30 (3.7) BS01 rna N/A N/A G1T8A2 38718836
    899349 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    899350 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    899351 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    899352 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    899353 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    899354 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    899355 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    899356 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    899357 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    899358 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    899359 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    899360 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    899361 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    899362 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    899363 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    899364 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    899365 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    899366 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    899367 9beb:A (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899368 9beb:A (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899369 9beb:A (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899370 9beb:B (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899371 9beb:B (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899372 9beb:B (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899373 9beb:C (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899374 9beb:C (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899375 9beb:C (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899376 9beb:D (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899377 9beb:D (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899378 9beb:D (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899379 9beb:E (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899380 9beb:E (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899381 9beb:E (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899382 9beb:F (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    899383 9beb:F (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    899384 9beb:F (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    899385 9bed:A (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    899386 9bed:A (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    899387 9bed:A (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    899388 9bed:B (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    899389 9bed:B (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    899390 9bed:B (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    899391 9bed:C (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    899392 9bed:C (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    899393 9bed:C (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    899394 9bed:D (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    899395 9bed:D (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    899396 9bed:D (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    899397 9bed:E (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    899398 9bed:E (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    899399 9bed:E (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    899400 9bed:F (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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