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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    894601 8xtf:A (2.13) BS01 SAH N/A N/A A0A0B5L781 39150221
    894602 8xtf:A (2.13) BS02 A1LWC N/A N/A A0A0B5L781 39150221
    894603 8xtg:A (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    894604 8xtg:A (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    894605 8xtg:B (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    894606 8xtg:B (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    894607 8xtg:C (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    894608 8xtg:C (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    894609 8xtg:D (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    894610 8xtg:D (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    894611 8xtg:E (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    894612 8xtg:E (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    894613 8xtg:F (2.0) BS01 SAH N/A N/A A0A0B5L781 39150221
    894614 8xtg:F (2.0) BS02 A1LWD N/A N/A A0A0B5L781 39150221
    894615 8xud:C (3.49) BS01 peptide 3.4.21.102 N/A P23865 N/A
    894616 8xud:D (3.49) BS01 peptide 3.4.21.102 N/A P23865 N/A
    894617 8xuo:A (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    894618 8xuo:A (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    894619 8xuo:G (2.84) BS01 ADP ? N/A A0A3Q7IF17 38866053
    894620 8xuo:G (2.84) BS02 IHP ? N/A A0A3Q7IF17 38866053
    894621 8xuq:A (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894622 8xuq:A (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894623 8xuq:E (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894624 8xuq:E (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894625 8xuq:F (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894626 8xuq:F (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894627 8xuq:G (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894628 8xuq:G (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894629 8xus:B (3.18) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    894630 8xut:A (3.2) BS01 IDU N/A N/A P0DTC2 39071099
    894631 8xut:B (3.2) BS01 IDU N/A N/A P0DTC2 39071099
    894632 8xuu:A (3.69) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    894633 8xuv:A (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894634 8xuv:A (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894635 8xuv:B (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894636 8xuv:B (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894637 8xuv:C (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894638 8xuv:C (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894639 8xuv:D (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894640 8xuv:D (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894641 8xuv:E (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894642 8xuv:E (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894643 8xuv:F (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894644 8xuv:F (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894645 8xuv:G (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894646 8xuv:G (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894647 8xuv:H (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894648 8xuv:H (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894649 8xuv:I (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894650 8xuv:I (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894651 8xuv:J (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894652 8xuv:J (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894653 8xuv:K (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894654 8xuv:K (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894655 8xuv:L (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    894656 8xuv:L (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    894657 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    894658 8xv5:A (3.7) BS01 PXM ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    894659 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    894660 8xvb:A (3.4) BS01 dna N/A N/A P03763 39085263
    894661 8xvb:A (3.4) BS02 ATP N/A N/A P03763 39085263
    894662 8xvb:A (3.4) BS03 ATP N/A N/A P03763 39085263
    894663 8xvb:B (3.4) BS01 dna N/A N/A P03763 39085263
    894664 8xvb:B (3.4) BS02 ATP N/A N/A P03763 39085263
    894665 8xvb:B (3.4) BS03 ATP N/A N/A P03763 39085263
    894666 8xvb:C (3.4) BS01 dna N/A N/A P03763 39085263
    894667 8xvb:C (3.4) BS02 dna N/A N/A P03763 39085263
    894668 8xvb:C (3.4) BS03 ATP N/A N/A P03763 39085263
    894669 8xvb:D (3.4) BS01 dna N/A N/A P03763 39085263
    894670 8xvb:D (3.4) BS02 dna N/A N/A P03763 39085263
    894671 8xvb:D (3.4) BS03 ATP N/A N/A P03763 39085263
    894672 8xvb:D (3.4) BS04 ATP N/A N/A P03763 39085263
    894673 8xvb:E (3.4) BS01 dna N/A N/A P03763 39085263
    894674 8xvb:E (3.4) BS02 ATP N/A N/A P03763 39085263
    894675 8xvb:F (3.4) BS01 dna N/A N/A P03763 39085263
    894676 8xvb:F (3.4) BS02 dna N/A N/A P03763 39085263
    894677 8xvb:F (3.4) BS03 ATP N/A N/A P03763 39085263
    894678 8xvb:G (3.4) BS01 dna N/A N/A P03763 39085263
    894679 8xvb:G (3.4) BS02 dna N/A N/A P03763 39085263
    894680 8xvb:G (3.4) BS03 ATP N/A N/A P03763 39085263
    894681 8xvb:G (3.4) BS04 ATP N/A N/A P03763 39085263
    894682 8xvb:H (3.4) BS01 dna N/A N/A P03763 39085263
    894683 8xvb:H (3.4) BS02 dna N/A N/A P03763 39085263
    894684 8xvb:H (3.4) BS03 ATP N/A N/A P03763 39085263
    894685 8xvc:A (4.32) BS01 ADP N/A N/A P03763 39085263
    894686 8xvc:B (4.32) BS01 ADP N/A N/A P03763 39085263
    894687 8xvc:C (4.32) BS01 ADP N/A N/A P03763 39085263
    894688 8xvc:D (4.32) BS01 ADP N/A N/A P03763 39085263
    894689 8xvc:E (4.32) BS01 ADP N/A N/A P03763 39085263
    894690 8xvc:F (4.32) BS01 ADP N/A N/A P03763 39085263
    894691 8xvc:G (4.32) BS01 ADP N/A N/A P03763 39085263
    894692 8xvc:H (4.32) BS01 ADP N/A N/A P03763 39085263
    894693 8xvc:I (4.32) BS01 ADP N/A N/A P03763 39085263
    894694 8xvc:J (4.32) BS01 ADP N/A N/A P03763 39085263
    894695 8xvc:K (4.32) BS01 ADP N/A N/A P03763 39085263
    894696 8xvc:L (4.32) BS01 ADP N/A N/A P03763 39085263
    894697 8xvc:M (4.32) BS01 ADP N/A N/A P03763 39085263
    894698 8xvc:N (4.32) BS01 ADP N/A N/A P03763 39085263
    894699 8xvc:O (4.32) BS01 ADP N/A N/A P03763 39085263
    894700 8xvc:P (4.32) BS01 ADP N/A N/A P03763 39085263
    894701 8xvc:Q (4.32) BS01 ADP N/A N/A P03763 39085263
    894702 8xvc:R (4.32) BS01 ADP N/A N/A P03763 39085263
    894703 8xvd:A (4.43) BS01 ADP N/A N/A P03763 39085263
    894704 8xvd:B (4.43) BS01 ADP N/A N/A P03763 39085263
    894705 8xvd:C (4.43) BS01 ADP N/A N/A P03763 39085263
    894706 8xvd:D (4.43) BS01 ADP N/A N/A P03763 39085263
    894707 8xvd:E (4.43) BS01 ADP N/A N/A P03763 39085263
    894708 8xvd:F (4.43) BS01 ADP N/A N/A P03763 39085263
    894709 8xvd:G (4.43) BS01 ADP N/A N/A P03763 39085263
    894710 8xvd:H (4.43) BS01 ADP N/A N/A P03763 39085263
    894711 8xvd:I (4.43) BS01 ADP N/A N/A P03763 39085263
    894712 8xvd:J (4.43) BS01 ADP N/A N/A P03763 39085263
    894713 8xvd:K (4.43) BS01 ADP N/A N/A P03763 39085263
    894714 8xvd:L (4.43) BS01 ADP N/A N/A P03763 39085263
    894715 8xvd:M (4.43) BS01 ADP N/A N/A P03763 39085263
    894716 8xvd:N (4.43) BS01 ADP N/A N/A P03763 39085263
    894717 8xvd:O (4.43) BS01 ADP N/A N/A P03763 39085263
    894718 8xvd:P (4.43) BS01 ADP N/A N/A P03763 39085263
    894719 8xvd:Q (4.43) BS01 ADP N/A N/A P03763 39085263
    894720 8xvd:R (4.43) BS01 ADP N/A N/A P03763 39085263
    894721 8xvd:S (4.43) BS01 ADP N/A N/A P03763 39085263
    894722 8xvd:T (4.43) BS01 ADP N/A N/A P03763 39085263
    894723 8xve:R (3.0) BS01 peptide N/A N/A P24530
    Q59310    		 39075075
    894724 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894725 8xvf:B (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894726 8xvf:C (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894727 8xvf:D (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894728 8xvf:E (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894729 8xvf:F (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894730 8xvf:G (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894731 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    894732 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    894733 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    894734 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    894735 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    894736 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    894737 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    894738 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    894739 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    894740 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    894741 8xvg:K (9.4) BS01 ADP N/A N/A A0A7K5XZZ2 39154037
    894742 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    894743 8xvh:R (3.26) BS01 peptide N/A N/A P24530
    Q59310    		 39075075
    894744 8xvi:R (3.32) BS01 peptide N/A N/A P16218
    P25101    		 39075075
    894745 8xvj:R (3.26) BS01 A1D5I N/A N/A P0ABE7
    P16218
    P25101    		 39075075
    894746 8xvk:R (3.21) BS01 A1D5J N/A N/A P0ABE7
    P16218
    P25101    		 39075075
    894747 8xvl:R (3.22) BS01 A1D5L N/A N/A P0ABE7
    P16218
    P25101    		 39075075
    894748 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    894749 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    894750 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    894751 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    894752 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    894753 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    894754 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    894755 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    894756 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    894757 8xvt:K (3.2) BS01 ADP N/A GO:0000079 ... P60709 39154037
    894758 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    894759 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    894760 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    894761 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    894762 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    894763 8xw6:A (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894764 8xw6:A (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894765 8xw6:A (1.99) BS03 ATP N/A GO:0004743 ... Q8DQ84 39009072
    894766 8xw6:A (1.99) BS04 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894767 8xw6:B (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894768 8xw6:B (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894769 8xw6:B (1.99) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894770 8xw7:A (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894771 8xw7:A (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894772 8xw7:A (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894773 8xw7:A (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    894774 8xw7:B (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894775 8xw7:B (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894776 8xw7:B (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894777 8xw7:B (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    894778 8xw8:A (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894779 8xw8:A (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894780 8xw8:A (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    894781 8xw8:A (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894782 8xw8:B (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894783 8xw8:B (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894784 8xw8:B (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    894785 8xw8:B (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894786 8xw8:C (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894787 8xw8:C (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894788 8xw8:C (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    894789 8xw8:C (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894790 8xw8:D (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894791 8xw8:D (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894792 8xw8:D (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    894793 8xw8:D (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894794 8xw9:A (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894795 8xw9:A (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894796 8xw9:A (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    894797 8xw9:A (1.75) BS04 UDP N/A GO:0004743 ... Q8DQ84 39009072
    894798 8xw9:B (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    894799 8xw9:B (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    894800 8xw9:B (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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