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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    890801 8wre:A (2.9) BS01 LDP N/A N/A Q05940 N/A
    890802 8wrj:A (1.85) BS01 6JI 2.4.1.- GO:0008194 ... W8JMV4 N/A
    890803 8wrj:A (1.85) BS02 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    890804 8wrk:A (2.03) BS01 PIT 2.4.1.- GO:0008194 ... W8JMV4 N/A
    890805 8wrk:A (2.03) BS02 UDP 2.4.1.- GO:0008194 ... W8JMV4 N/A
    890806 8wrx:A (1.45) BS01 ZN N/A N/A N/A 38726868
    890807 8wrz:A (3.6) BS01 peptide ? GO:0000139 ... P49407 38102480
    890808 8wrz:R (3.6) BS01 8D0 ? GO:0004930 ... P0ABE7
    P21554    		 38102480
    890809 8wsm:A (2.7) BS01 ADP 3.6.4.- N/A Q96P20 38116417
    890810 8wsm:A (2.7) BS02 XE3 3.6.4.- N/A Q96P20 38116417
    890811 8wss:R (3.01) BS01 peptide N/A GO:0004930 ... Q99705 38710677
    890812 8wst:R (2.4) BS01 peptide N/A GO:0004930 ... Q969V1 38710677
    890813 8wsw:A (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    890814 8wsw:B (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    890815 8wsw:C (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    890816 8wsw:D (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    890817 8wt1:A (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890818 8wt1:B (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890819 8wt1:C (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890820 8wt1:D (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890821 8wt1:E (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890822 8wt1:F (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890823 8wt1:G (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890824 8wt1:H (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    890825 8wt6:A (2.5) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890826 8wt6:A (2.5) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890827 8wt6:A (2.5) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890828 8wt6:A (2.5) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890829 8wt6:A (2.5) BS05 MG N/A N/A A0A2X3M8B0 38926616
    890830 8wt6:B (2.5) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890831 8wt6:B (2.5) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890832 8wt6:B (2.5) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890833 8wt6:B (2.5) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890834 8wt6:B (2.5) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890835 8wt6:B (2.5) BS06 dna N/A N/A A0A2X3M8B0 38926616
    890836 8wt6:C (2.5) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890837 8wt6:C (2.5) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890838 8wt6:C (2.5) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890839 8wt6:C (2.5) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890840 8wt6:C (2.5) BS05 MG N/A N/A A0A2X3M8B0 38926616
    890841 8wt6:D (2.5) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890842 8wt6:D (2.5) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890843 8wt6:D (2.5) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890844 8wt6:D (2.5) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890845 8wt6:D (2.5) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890846 8wt6:D (2.5) BS06 dna N/A N/A A0A2X3M8B0 38926616
    890847 8wt7:A (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890848 8wt7:A (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890849 8wt7:A (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890850 8wt7:A (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890851 8wt7:A (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    890852 8wt7:B (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890853 8wt7:B (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890854 8wt7:B (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890855 8wt7:B (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890856 8wt7:B (2.7) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890857 8wt7:C (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890858 8wt7:C (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890859 8wt7:C (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890860 8wt7:C (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890861 8wt7:C (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    890862 8wt7:D (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890863 8wt7:D (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890864 8wt7:D (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890865 8wt7:D (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890866 8wt7:D (2.7) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890867 8wt8:A (2.9) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890868 8wt8:A (2.9) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890869 8wt8:A (2.9) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890870 8wt8:A (2.9) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890871 8wt8:A (2.9) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890872 8wt8:A (2.9) BS06 MG N/A N/A A0A2X3M8B0 38926616
    890873 8wt8:B (2.9) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890874 8wt8:B (2.9) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890875 8wt8:B (2.9) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890876 8wt8:B (2.9) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890877 8wt8:C (2.9) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890878 8wt8:C (2.9) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890879 8wt8:C (2.9) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890880 8wt8:C (2.9) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890881 8wt8:C (2.9) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890882 8wt8:D (2.9) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890883 8wt8:D (2.9) BS02 dna N/A N/A A0A2X3M8B0 38926616
    890884 8wt8:D (2.9) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890885 8wt8:D (2.9) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890886 8wt8:D (2.9) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890887 8wt9:A (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890888 8wt9:A (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890889 8wt9:A (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890890 8wt9:A (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890891 8wt9:A (2.7) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890892 8wt9:A (2.7) BS06 dna N/A N/A A0A2X3M8B0 38926616
    890893 8wt9:B (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890894 8wt9:B (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890895 8wt9:B (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890896 8wt9:B (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890897 8wt9:B (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    890898 8wt9:C (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890899 8wt9:C (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890900 8wt9:C (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890901 8wt9:C (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890902 8wt9:C (2.7) BS05 dna N/A N/A A0A2X3M8B0 38926616
    890903 8wt9:C (2.7) BS06 dna N/A N/A A0A2X3M8B0 38926616
    890904 8wt9:D (2.7) BS01 rna N/A N/A A0A2X3M8B0 38926616
    890905 8wt9:D (2.7) BS02 rna N/A N/A A0A2X3M8B0 38926616
    890906 8wt9:D (2.7) BS03 dna N/A N/A A0A2X3M8B0 38926616
    890907 8wt9:D (2.7) BS04 dna N/A N/A A0A2X3M8B0 38926616
    890908 8wt9:D (2.7) BS05 MG N/A N/A A0A2X3M8B0 38926616
    890909 8wtb:B (2.9) BS01 ZN ? GO:0005507 ... P37569 38625935
    890910 8wtb:D (2.9) BS01 ZN ? GO:0005507 ... P37569 38625935
    890911 8wtc:B (2.8) BS01 ZN ? GO:0005507 ... P37569 38625935
    890912 8wtc:D (2.8) BS01 ZN ? GO:0005507 ... P37569 38625935
    890913 8wte:B (2.17) BS01 peptide N/A N/A N/A 38684865
    890914 8wte:D (2.17) BS01 peptide N/A N/A N/A 38684865
    890915 8wte:E (2.17) BS01 peptide N/A N/A A0A583ZB34 38684865
    890916 8wte:H (2.17) BS01 peptide N/A N/A A0A583ZB34 38684865
    890917 8wtf:A (2.0) BS01 8CG 2.7.11.1 GO:0000287 ... Q9NWZ3 N/A
    890918 8wti:A (1.5) BS01 X1Z N/A N/A P0DTC1 38101266
    890919 8wti:B (1.5) BS01 X1Z N/A N/A P0DTC1 38101266
    890920 8wtq:A (2.0) BS01 KUO 2.5.1.21 N/A P37268 38517948
    890921 8wtr:A (2.0) BS01 KV3 2.5.1.21 N/A P37268 38517948
    890922 8wtv:A (2.7) BS01 E5E N/A N/A P23975 39085602
    890923 8wtv:A (2.7) BS02 E5E N/A N/A P23975 39085602
    890924 8wtw:A (2.8) BS01 peptide N/A N/A P23975 39085602
    890925 8wtw:A (2.8) BS02 0A1 N/A N/A P23975 39085602
    890926 8wtx:A (2.9) BS01 Y60 N/A N/A P23975 39085602
    890927 8wty:A (3.2) BS01 XEF N/A N/A P23975 39085602
    890928 8wu1:R (3.2) BS01 KCA ? GO:0004930 ... P21554
    P30518    		 N/A
    890929 8wu8:A (2.81) BS01 peptide 3.1.11.2 GO:0000077 ... Q99638 38354779
    890930 8wuc:A (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890931 8wuc:B (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890932 8wuc:C (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890933 8wuc:D (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890934 8wuc:E (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890935 8wuc:F (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890936 8wuc:G (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890937 8wuc:H (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890938 8wuc:I (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890939 8wuc:J (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890940 8wuc:K (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890941 8wuc:L (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890942 8wuc:M (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890943 8wuc:N (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    890944 8wue:A (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    890945 8wue:B (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    890946 8wue:C (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    890947 8wue:D (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    890948 8wue:E (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    890949 8wue:F (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    890950 8wug:A (1.7) BS01 ZN 1.14.11.66 N/A Q6B0I6 N/A
    890951 8wul:B (2.36) BS01 peptide N/A N/A N/A 38684865
    890952 8wul:D (2.36) BS01 peptide N/A N/A N/A 38684865
    890953 8wul:F (2.36) BS01 peptide N/A N/A N/A 38684865
    890954 8wul:H (2.36) BS01 peptide N/A N/A N/A 38684865
    890955 8wul:I (2.36) BS01 peptide ? N/A A0A583ZB34 38684865
    890956 8wul:L (2.36) BS01 peptide ? N/A A0A583ZB34 38684865
    890957 8wul:O (2.36) BS01 peptide ? N/A A0A583ZB34 38684865
    890958 8wul:R (2.36) BS01 peptide ? N/A A0A583ZB34 38684865
    890959 8wus:A (2.9) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890960 8wus:A (2.9) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890961 8wus:A (2.9) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890962 8wus:E (2.9) BS01 rna ? N/A Q8UN00 38811740
    890963 8wus:E (2.9) BS02 dna ? N/A Q8UN00 38811740
    890964 8wut:A (3.0) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890965 8wut:A (3.0) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890966 8wut:A (3.0) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890967 8wut:E (3.0) BS01 rna ? N/A Q8UN00 38811740
    890968 8wut:E (3.0) BS02 dna ? N/A Q8UN00 38811740
    890969 8wuu:A (3.2) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890970 8wuu:A (3.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890971 8wuu:A (3.2) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890972 8wuv:A (3.0) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890973 8wuv:A (3.0) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890974 8wuv:A (3.0) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    890975 8wuv:E (3.0) BS01 rna ? N/A Q8UN00 38811740
    890976 8wuv:E (3.0) BS02 dna ? N/A Q8UN00 38811740
    890977 8wuw:A (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890978 8wuw:B (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890979 8wuw:C (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890980 8wuw:D (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890981 8wuw:E (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890982 8wuw:F (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890983 8wuw:G (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890984 8wuw:H (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890985 8wuw:I (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890986 8wuw:J (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890987 8wuw:K (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890988 8wuw:L (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890989 8wuw:M (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890990 8wuw:N (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890991 8wux:A (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890992 8wux:B (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890993 8wux:C (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890994 8wux:D (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890995 8wux:E (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890996 8wux:F (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890997 8wux:G (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890998 8wux:H (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    890999 8wux:I (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    891000 8wux:J (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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