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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    888601 8wm6:n (2.7) BS04 CLA N/A N/A N/A 38734819
    888602 8wm6:n (2.7) BS05 CLA N/A N/A N/A 38734819
    888603 8wm6:n (2.7) BS06 CLA N/A N/A N/A 38734819
    888604 8wm6:n (2.7) BS07 CLA N/A N/A N/A 38734819
    888605 8wm6:n (2.7) BS08 CLA N/A N/A N/A 38734819
    888606 8wm6:n (2.7) BS09 CLA N/A N/A N/A 38734819
    888607 8wm6:n (2.7) BS10 CLA N/A N/A N/A 38734819
    888608 8wm6:n (2.7) BS11 CLA N/A N/A N/A 38734819
    888609 8wm6:n (2.7) BS12 CLA N/A N/A N/A 38734819
    888610 8wm6:n (2.7) BS13 CLA N/A N/A N/A 38734819
    888611 8wm6:n (2.7) BS14 KC2 N/A N/A N/A 38734819
    888612 8wm6:n (2.7) BS15 KC2 N/A N/A N/A 38734819
    888613 8wm6:n (2.7) BS16 CLA N/A N/A N/A 38734819
    888614 8wm6:n (2.7) BS17 II0 N/A N/A N/A 38734819
    888615 8wm6:n (2.7) BS18 II0 N/A N/A N/A 38734819
    888616 8wm6:n (2.7) BS19 II0 N/A N/A N/A 38734819
    888617 8wm6:n (2.7) BS20 IHT N/A N/A N/A 38734819
    888618 8wm6:n (2.7) BS21 II0 N/A N/A N/A 38734819
    888619 8wm6:s (2.7) BS01 KC2 N/A N/A N/A 38734819
    888620 8wm6:s (2.7) BS02 CLA N/A N/A N/A 38734819
    888621 8wm6:s (2.7) BS03 CLA N/A N/A N/A 38734819
    888622 8wm6:s (2.7) BS04 KC2 N/A N/A N/A 38734819
    888623 8wm6:s (2.7) BS05 WVN N/A N/A N/A 38734819
    888624 8wm6:s (2.7) BS06 CLA N/A N/A N/A 38734819
    888625 8wm6:s (2.7) BS07 CLA N/A N/A N/A 38734819
    888626 8wm6:s (2.7) BS08 CLA N/A N/A N/A 38734819
    888627 8wm6:s (2.7) BS09 CLA N/A N/A N/A 38734819
    888628 8wm6:s (2.7) BS10 CLA N/A N/A N/A 38734819
    888629 8wm6:s (2.7) BS11 CLA N/A N/A N/A 38734819
    888630 8wm7:C (3.53) BS01 ADP 7.3.2.4 GO:0005524 ... Q8YZ76 38457518
    888631 8wm7:D (3.53) BS01 ADP ? GO:0005524 ... Q8YZ75 38457518
    888632 8wm7:E (3.53) BS01 ADP ? GO:0000166 ... Q9L422 38457518
    888633 8wm7:E (3.53) BS02 ADP ? GO:0000166 ... Q9L422 38457518
    888634 8wm7:F (3.53) BS01 ADP ? GO:0000166 ... Q9L422 38457518
    888635 8wm7:F (3.53) BS02 ADP ? GO:0000166 ... Q9L422 38457518
    888636 8wm7:G (3.53) BS01 ADP ? GO:0000166 ... Q9L422 38457518
    888637 8wm7:G (3.53) BS02 ADP ? GO:0000166 ... Q9L422 38457518
    888638 8wm8:A (3.54) BS01 NO3 ? GO:0005886 ... Q8YZ77 38457518
    888639 8wm8:B (3.54) BS01 NO3 ? GO:0005886 ... Q8YZ77 38457518
    888640 8wm9:A (3.53) BS01 Y01 N/A N/A Q9ULV1 39223191
    888641 8wm9:A (3.53) BS02 Y01 N/A N/A Q9ULV1 39223191
    888642 8wm9:A (3.53) BS03 Y01 N/A N/A Q9ULV1 39223191
    888643 8wm9:B (3.53) BS01 Y01 N/A N/A Q9ULV1 39223191
    888644 8wm9:B (3.53) BS02 Y01 N/A N/A Q9ULV1 39223191
    888645 8wmc:A (2.9) BS01 rna ? GO:0051607 ... A0A401FT36 38735995
    888646 8wmc:A (2.9) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    888647 8wmc:A (2.9) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    888648 8wmc:A (2.9) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    888649 8wmg:A (1.97) BS01 WRW ? GO:0030246 ... P02866 N/A
    888650 8wmg:A (1.97) BS02 MAN ? GO:0030246 ... P02866 N/A
    888651 8wmg:A (1.97) BS03 MAN ? GO:0030246 ... P02866 N/A
    888652 8wmg:A (1.97) BS04 MN ? GO:0030246 ... P02866 N/A
    888653 8wmg:A (1.97) BS05 CA ? GO:0030246 ... P02866 N/A
    888654 8wmg:B (1.97) BS01 MN ? GO:0030246 ... P02866 N/A
    888655 8wmg:B (1.97) BS02 CA ? GO:0030246 ... P02866 N/A
    888656 8wmh:A (2.6) BS01 rna N/A N/A N/A 38811729
    888657 8wmh:A (2.6) BS02 dna N/A N/A N/A 38811729
    888658 8wmh:A (2.6) BS03 dna N/A N/A N/A 38811729
    888659 8wmi:A (3.53) BS01 rna ? GO:0051607 ... A0A401FT36 38735995
    888660 8wmi:A (3.53) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    888661 8wmi:A (3.53) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    888662 8wmi:A (3.53) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    888663 8wmj:A (3.0) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888664 8wmj:A (3.0) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888665 8wmj:A (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888666 8wmj:A (3.0) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888667 8wmj:A (3.0) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888668 8wmj:A (3.0) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888669 8wmj:A (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888670 8wmj:A (3.0) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888671 8wmj:A (3.0) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888672 8wmj:A (3.0) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888673 8wmj:A (3.0) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888674 8wmj:A (3.0) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888675 8wmj:A (3.0) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888676 8wmj:A (3.0) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888677 8wmj:A (3.0) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888678 8wmj:A (3.0) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888679 8wmj:A (3.0) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888680 8wmj:A (3.0) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888681 8wmj:A (3.0) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888682 8wmj:A (3.0) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888683 8wmj:A (3.0) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888684 8wmj:A (3.0) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888685 8wmj:A (3.0) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888686 8wmj:A (3.0) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888687 8wmj:A (3.0) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888688 8wmj:A (3.0) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888689 8wmj:A (3.0) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888690 8wmj:A (3.0) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888691 8wmj:A (3.0) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888692 8wmj:A (3.0) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888693 8wmj:A (3.0) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888694 8wmj:A (3.0) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888695 8wmj:A (3.0) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888696 8wmj:A (3.0) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888697 8wmj:A (3.0) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888698 8wmj:A (3.0) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888699 8wmj:A (3.0) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888700 8wmj:A (3.0) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888701 8wmj:A (3.0) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888702 8wmj:A (3.0) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888703 8wmj:A (3.0) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888704 8wmj:A (3.0) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888705 8wmj:A (3.0) BS43 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888706 8wmj:A (3.0) BS44 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888707 8wmj:A (3.0) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888708 8wmj:A (3.0) BS46 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888709 8wmj:A (3.0) BS47 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888710 8wmj:A (3.0) BS48 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888711 8wmj:A (3.0) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888712 8wmj:A (3.0) BS50 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888713 8wmj:A (3.0) BS51 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888714 8wmj:A (3.0) BS52 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888715 8wmj:A (3.0) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888716 8wmj:A (3.0) BS54 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888717 8wmj:A (3.0) BS55 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888718 8wmj:A (3.0) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888719 8wmj:A (3.0) BS57 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888720 8wmj:A (3.0) BS58 II0 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888721 8wmj:A (3.0) BS59 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888722 8wmj:B (3.0) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888723 8wmj:B (3.0) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888724 8wmj:B (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888725 8wmj:B (3.0) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888726 8wmj:B (3.0) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888727 8wmj:B (3.0) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888728 8wmj:B (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888729 8wmj:B (3.0) BS08 SF4 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888730 8wmj:B (3.0) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888731 8wmj:B (3.0) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888732 8wmj:B (3.0) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888733 8wmj:B (3.0) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888734 8wmj:B (3.0) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888735 8wmj:B (3.0) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888736 8wmj:B (3.0) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888737 8wmj:B (3.0) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888738 8wmj:B (3.0) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888739 8wmj:B (3.0) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888740 8wmj:B (3.0) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888741 8wmj:B (3.0) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888742 8wmj:B (3.0) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888743 8wmj:B (3.0) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888744 8wmj:B (3.0) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888745 8wmj:B (3.0) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888746 8wmj:B (3.0) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888747 8wmj:B (3.0) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888748 8wmj:B (3.0) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888749 8wmj:B (3.0) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888750 8wmj:B (3.0) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888751 8wmj:B (3.0) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888752 8wmj:B (3.0) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888753 8wmj:B (3.0) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888754 8wmj:B (3.0) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888755 8wmj:B (3.0) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888756 8wmj:B (3.0) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888757 8wmj:B (3.0) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888758 8wmj:B (3.0) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888759 8wmj:B (3.0) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888760 8wmj:B (3.0) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888761 8wmj:B (3.0) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888762 8wmj:B (3.0) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888763 8wmj:B (3.0) BS42 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888764 8wmj:B (3.0) BS43 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888765 8wmj:B (3.0) BS44 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888766 8wmj:B (3.0) BS45 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888767 8wmj:B (3.0) BS46 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888768 8wmj:B (3.0) BS47 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888769 8wmj:B (3.0) BS48 PQN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888770 8wmj:B (3.0) BS49 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888771 8wmj:B (3.0) BS50 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888772 8wmj:B (3.0) BS51 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888773 8wmj:B (3.0) BS52 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888774 8wmj:B (3.0) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888775 8wmj:B (3.0) BS54 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888776 8wmj:B (3.0) BS55 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888777 8wmj:B (3.0) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888778 8wmj:B (3.0) BS57 WVN 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888779 8wmj:B (3.0) BS58 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    888780 8wmj:C (3.0) BS01 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    888781 8wmj:C (3.0) BS02 SF4 1.97.1.12 GO:0009055 ... A6MVS8 38734819
    888782 8wmj:F (3.0) BS01 CLA ? N/A A6MVU7 38734819
    888783 8wmj:F (3.0) BS02 CLA ? N/A A6MVU7 38734819
    888784 8wmj:F (3.0) BS03 CLA ? N/A A6MVU7 38734819
    888785 8wmj:F (3.0) BS04 CLA ? N/A A6MVU7 38734819
    888786 8wmj:F (3.0) BS05 CLA ? N/A A6MVU7 38734819
    888787 8wmj:F (3.0) BS06 CLA ? N/A A6MVU7 38734819
    888788 8wmj:F (3.0) BS07 CLA ? N/A A6MVU7 38734819
    888789 8wmj:F (3.0) BS08 WVN ? N/A A6MVU7 38734819
    888790 8wmj:F (3.0) BS09 CLA ? N/A A6MVU7 38734819
    888791 8wmj:I (3.0) BS01 CLA ? GO:0009507 ... A6MVV1 38734819
    888792 8wmj:I (3.0) BS02 CLA ? GO:0009507 ... A6MVV1 38734819
    888793 8wmj:I (3.0) BS03 CLA ? GO:0009507 ... A6MVV1 38734819
    888794 8wmj:I (3.0) BS04 WVN ? GO:0009507 ... A6MVV1 38734819
    888795 8wmj:I (3.0) BS05 WVN ? GO:0009507 ... A6MVV1 38734819
    888796 8wmj:I (3.0) BS06 CLA ? GO:0009507 ... A6MVV1 38734819
    888797 8wmj:J (3.0) BS01 CLA ? GO:0009507 ... A6MVU6 38734819
    888798 8wmj:J (3.0) BS02 CLA ? GO:0009507 ... A6MVU6 38734819
    888799 8wmj:J (3.0) BS03 CLA ? GO:0009507 ... A6MVU6 38734819
    888800 8wmj:J (3.0) BS04 CLA ? GO:0009507 ... A6MVU6 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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