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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    888001 8wkr:C (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    888002 8wkr:D (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    888003 8wkr:D (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    888004 8wku:B (3.5) BS01 MAN N/A N/A A0AAE8ZFM2 38877169
    888005 8wku:B (3.5) BS02 MAN N/A N/A A0AAE8ZFM2 38877169
    888006 8wky:A (2.9) BS01 peptide N/A N/A P32245 38345933
    888007 8wky:A (2.9) BS02 CA N/A N/A P32245 38345933
    888008 8wkz:A (3.3) BS01 peptide N/A N/A P32245 38345933
    888009 8wkz:A (3.3) BS02 CA N/A N/A P32245 38345933
    888010 8wl2:A0 (3.4) BS01 peptide N/A N/A P16437 N/A
    888011 8wl2:A0 (3.4) BS02 peptide N/A N/A P16437 N/A
    888012 8wl2:A5 (3.4) BS01 peptide N/A N/A P26462 N/A
    888013 8wl2:A6 (3.4) BS01 peptide N/A N/A P16437 N/A
    888014 8wl2:A6 (3.4) BS02 peptide N/A N/A P16437 N/A
    888015 8wl2:A7 (3.4) BS01 peptide N/A N/A P16437 N/A
    888016 8wl2:A7 (3.4) BS02 peptide N/A N/A P16437 N/A
    888017 8wl2:A8 (3.4) BS01 peptide N/A N/A P16437 N/A
    888018 8wl2:A8 (3.4) BS02 peptide N/A N/A P16437 N/A
    888019 8wl2:A9 (3.4) BS01 peptide N/A N/A P16437 N/A
    888020 8wl2:A9 (3.4) BS02 peptide N/A N/A P16437 N/A
    888021 8wl2:AA (3.4) BS01 peptide N/A N/A P16323 N/A
    888022 8wl2:AA (3.4) BS02 peptide N/A N/A P16323 N/A
    888023 8wl2:AB (3.4) BS01 peptide N/A N/A P16323 N/A
    888024 8wl2:AB (3.4) BS02 peptide N/A N/A P16323 N/A
    888025 8wl2:AC (3.4) BS01 peptide N/A N/A P16323 N/A
    888026 8wl2:AC (3.4) BS02 peptide N/A N/A P16323 N/A
    888027 8wl2:AD (3.4) BS01 peptide N/A N/A P16323 N/A
    888028 8wl2:AD (3.4) BS02 peptide N/A N/A P16323 N/A
    888029 8wl2:AE (3.4) BS01 peptide N/A N/A P16323 N/A
    888030 8wl2:AE (3.4) BS02 peptide N/A N/A P16323 N/A
    888031 8wl2:AI (3.4) BS01 peptide N/A N/A P0A1J3 N/A
    888032 8wl2:AV (3.4) BS01 peptide N/A N/A P15928 N/A
    888033 8wl2:Ao (3.4) BS01 peptide N/A N/A P15928 N/A
    888034 8wl2:BA (3.4) BS01 peptide N/A N/A P0A1I7 N/A
    888035 8wl2:BA (3.4) BS02 peptide N/A N/A P0A1I7 N/A
    888036 8wl2:BB (3.4) BS01 peptide N/A N/A P0A1I7 N/A
    888037 8wl2:BC (3.4) BS01 peptide N/A N/A P0A1I7 N/A
    888038 8wl2:BD (3.4) BS01 peptide N/A N/A P0A1I7 N/A
    888039 8wl2:BE (3.4) BS01 peptide N/A N/A P0A1I7 N/A
    888040 8wl2:BF (3.4) BS01 peptide N/A N/A P0A1I7 N/A
    888041 8wl2:BF (3.4) BS02 peptide N/A N/A P0A1I7 N/A
    888042 8wl7:A (1.74) BS01 ALL ? GO:0030246 ... A0A9W3L9M6 37820454
    888043 8wl9:A (1.93) BS01 RIP ? GO:0030246 ... A0A9W3L9M6 37820454
    888044 8wlb:A (1.71) BS01 WEB ? GO:0030246 ... A0A9W3L9M6 37820454
    888045 8wlh:P (3.7) BS01 peptide N/A N/A P26462 N/A
    888046 8wlh:Q (3.7) BS01 peptide N/A N/A P16437 N/A
    888047 8wlh:Q (3.7) BS02 peptide N/A N/A P16437 N/A
    888048 8wlh:R (3.7) BS01 peptide N/A N/A P16437 N/A
    888049 8wlh:R (3.7) BS02 peptide N/A N/A P16437 N/A
    888050 8wlh:S (3.7) BS01 peptide N/A N/A P16437 N/A
    888051 8wlh:S (3.7) BS02 peptide N/A N/A P16437 N/A
    888052 8wlh:T (3.7) BS01 peptide N/A N/A P16437 N/A
    888053 8wlh:T (3.7) BS02 peptide N/A N/A P16437 N/A
    888054 8wlh:U (3.7) BS01 peptide N/A N/A P16437 N/A
    888055 8wlh:U (3.7) BS02 peptide N/A N/A P16437 N/A
    888056 8wlh:V (3.7) BS01 peptide N/A N/A P0A1I7 N/A
    888057 8wlh:V (3.7) BS02 peptide N/A N/A P0A1I7 N/A
    888058 8wlh:W (3.7) BS01 peptide N/A N/A P0A1I7 N/A
    888059 8wlh:X (3.7) BS01 peptide N/A N/A P0A1I7 N/A
    888060 8wlh:Y (3.7) BS01 peptide N/A N/A P0A1I7 N/A
    888061 8wlh:Z (3.7) BS01 peptide N/A N/A P0A1I7 N/A
    888062 8wlh:a (3.7) BS01 peptide N/A N/A P0A1I7 N/A
    888063 8wlh:m (3.7) BS01 peptide N/A N/A P16323 N/A
    888064 8wlh:m (3.7) BS02 peptide N/A N/A P16323 N/A
    888065 8wlh:n (3.7) BS01 peptide N/A N/A P16323 N/A
    888066 8wlh:o (3.7) BS01 peptide N/A N/A P16323 N/A
    888067 8wlh:o (3.7) BS02 peptide N/A N/A P16323 N/A
    888068 8wlh:q (3.7) BS01 peptide N/A N/A P16323 N/A
    888069 8wlk:A (3.37) BS01 EBZ ? GO:0001975 ... Q05940 N/A
    888070 8wll:A (3.74) BS01 YHR ? GO:0001975 ... Q05940 N/A
    888071 8wlm:A (3.57) BS01 SRO ? GO:0001975 ... Q05940 N/A
    888072 8wln:4 (4.3) BS01 peptide N/A N/A P15928 N/A
    888073 8wln:AM (4.3) BS01 peptide N/A N/A P15928 N/A
    888074 8wln:P (4.3) BS01 peptide N/A N/A P26462 N/A
    888075 8wln:Q (4.3) BS01 peptide N/A N/A P16437 N/A
    888076 8wln:Q (4.3) BS02 peptide N/A N/A P16437 N/A
    888077 8wln:R (4.3) BS01 peptide N/A N/A P16437 N/A
    888078 8wln:R (4.3) BS02 peptide N/A N/A P16437 N/A
    888079 8wln:S (4.3) BS01 peptide N/A N/A P16437 N/A
    888080 8wln:S (4.3) BS02 peptide N/A N/A P16437 N/A
    888081 8wln:T (4.3) BS01 peptide N/A N/A P16437 N/A
    888082 8wln:T (4.3) BS02 peptide N/A N/A P16437 N/A
    888083 8wln:U (4.3) BS01 peptide N/A N/A P16437 N/A
    888084 8wln:U (4.3) BS02 peptide N/A N/A P16437 N/A
    888085 8wln:V (4.3) BS01 peptide N/A N/A P0A1I7 N/A
    888086 8wln:V (4.3) BS02 peptide N/A N/A P0A1I7 N/A
    888087 8wln:W (4.3) BS01 peptide N/A N/A P0A1I7 N/A
    888088 8wln:X (4.3) BS01 peptide N/A N/A P0A1I7 N/A
    888089 8wln:Y (4.3) BS01 peptide N/A N/A P0A1I7 N/A
    888090 8wln:Z (4.3) BS01 peptide N/A N/A P0A1I7 N/A
    888091 8wln:a (4.3) BS01 peptide N/A N/A P0A1I7 N/A
    888092 8wln:x (4.3) BS01 peptide N/A N/A P15928 N/A
    888093 8wlo:E (2.62) BS01 ZN N/A GO:0006508 ... N/A 38591877
    888094 8wlq:P (3.8) BS01 peptide N/A N/A P26462 N/A
    888095 8wlq:Q (3.8) BS01 peptide N/A N/A P16437 N/A
    888096 8wlq:Q (3.8) BS02 peptide N/A N/A P16437 N/A
    888097 8wlq:R (3.8) BS01 peptide N/A N/A P16437 N/A
    888098 8wlq:R (3.8) BS02 peptide N/A N/A P16437 N/A
    888099 8wlq:S (3.8) BS01 peptide N/A N/A P16437 N/A
    888100 8wlq:S (3.8) BS02 peptide N/A N/A P16437 N/A
    888101 8wlq:T (3.8) BS01 peptide N/A N/A P16437 N/A
    888102 8wlq:T (3.8) BS02 peptide N/A N/A P16437 N/A
    888103 8wlq:U (3.8) BS01 peptide N/A N/A P16437 N/A
    888104 8wlq:U (3.8) BS02 peptide N/A N/A P16437 N/A
    888105 8wlq:V (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    888106 8wlq:V (3.8) BS02 peptide N/A N/A P0A1I7 N/A
    888107 8wlq:W (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    888108 8wlq:X (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    888109 8wlq:Y (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    888110 8wlq:Z (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    888111 8wlq:a (3.8) BS01 peptide N/A N/A P0A1I7 N/A
    888112 8wlq:m (3.8) BS01 peptide N/A N/A P16323 N/A
    888113 8wlq:m (3.8) BS02 peptide N/A N/A P16323 N/A
    888114 8wlq:n (3.8) BS01 peptide N/A N/A P16323 N/A
    888115 8wlq:o (3.8) BS01 peptide N/A N/A P16323 N/A
    888116 8wlq:o (3.8) BS02 peptide N/A N/A P16323 N/A
    888117 8wlq:q (3.8) BS01 peptide N/A N/A P16323 N/A
    888118 8wlr:A (3.12) BS01 ZN N/A GO:0006508 ... N/A 38591877
    888119 8wls:A (-1.00) BS01 peptide ? GO:0042981 ... Q07817 38377677
    888120 8wlt:A0 (4.1) BS01 peptide N/A N/A P16437 N/A
    888121 8wlt:A0 (4.1) BS02 peptide N/A N/A P16437 N/A
    888122 8wlt:A5 (4.1) BS01 peptide N/A N/A P26462 N/A
    888123 8wlt:A6 (4.1) BS01 peptide N/A N/A P16437 N/A
    888124 8wlt:A6 (4.1) BS02 peptide N/A N/A P16437 N/A
    888125 8wlt:A7 (4.1) BS01 peptide N/A N/A P16437 N/A
    888126 8wlt:A7 (4.1) BS02 peptide N/A N/A P16437 N/A
    888127 8wlt:A8 (4.1) BS01 peptide N/A N/A P16437 N/A
    888128 8wlt:A8 (4.1) BS02 peptide N/A N/A P16437 N/A
    888129 8wlt:A9 (4.1) BS01 peptide N/A N/A P16437 N/A
    888130 8wlt:A9 (4.1) BS02 peptide N/A N/A P16437 N/A
    888131 8wlt:AA (4.1) BS01 peptide N/A N/A P16323 N/A
    888132 8wlt:AA (4.1) BS02 peptide N/A N/A P16323 N/A
    888133 8wlt:AB (4.1) BS01 peptide N/A N/A P16323 N/A
    888134 8wlt:AC (4.1) BS01 peptide N/A N/A P16323 N/A
    888135 8wlt:AC (4.1) BS02 peptide N/A N/A P16323 N/A
    888136 8wlt:AE (4.1) BS01 peptide N/A N/A P16323 N/A
    888137 8wlt:AV (4.1) BS01 peptide N/A N/A P15928 N/A
    888138 8wlt:Ao (4.1) BS01 peptide N/A N/A P15928 N/A
    888139 8wlt:BA (4.1) BS01 peptide N/A N/A P0A1I7 N/A
    888140 8wlt:BA (4.1) BS02 peptide N/A N/A P0A1I7 N/A
    888141 8wlt:BB (4.1) BS01 peptide N/A N/A P0A1I7 N/A
    888142 8wlt:BC (4.1) BS01 peptide N/A N/A P0A1I7 N/A
    888143 8wlt:BD (4.1) BS01 peptide N/A N/A P0A1I7 N/A
    888144 8wlt:BE (4.1) BS01 peptide N/A N/A P0A1I7 N/A
    888145 8wlt:BF (4.1) BS01 peptide N/A N/A P0A1I7 N/A
    888146 8wlt:BV (4.1) BS01 peptide N/A N/A P15928 N/A
    888147 8wlv:A (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    888148 8wlv:A (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    888149 8wlv:B (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    888150 8wlv:B (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    888151 8wlv:C (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    888152 8wlv:C (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    888153 8wlv:D (1.96) BS01 WHC N/A N/A I7G9Z0 N/A
    888154 8wlv:D (1.96) BS02 ZN N/A N/A I7G9Z0 N/A
    888155 8wlw:A (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    888156 8wlw:A (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    888157 8wlw:B (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    888158 8wlw:B (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    888159 8wlw:C (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    888160 8wlw:C (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    888161 8wlw:D (1.538) BS01 WHC N/A N/A I7G9Z0 N/A
    888162 8wlw:D (1.538) BS02 ZN N/A N/A I7G9Z0 N/A
    888163 8wlx:A (1.562) BS01 ZN N/A N/A I7G9Z0 N/A
    888164 8wlx:B (1.562) BS01 ZN N/A N/A I7G9Z0 N/A
    888165 8wm0:A (2.8) BS01 peptide 2.7.11.1 GO:0004672 ... Q9UKE5 38491946
    888166 8wm0:A (2.8) BS02 ADN 2.7.11.1 GO:0004672 ... Q9UKE5 38491946
    888167 8wm3:A (3.34) BS01 TGI N/A N/A Q9NP91 39159813
    888168 8wm3:C (3.34) BS01 TGI N/A N/A Q9NP91 39159813
    888169 8wm4:A (2.93) BS01 rna ? GO:0051607 ... A0A401FT36 38735995
    888170 8wm4:A (2.93) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    888171 8wm4:A (2.93) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    888172 8wm4:A (2.93) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    888173 8wm6:A (2.7) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888174 8wm6:A (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888175 8wm6:A (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888176 8wm6:A (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888177 8wm6:A (2.7) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888178 8wm6:A (2.7) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888179 8wm6:A (2.7) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888180 8wm6:A (2.7) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888181 8wm6:A (2.7) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888182 8wm6:A (2.7) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888183 8wm6:A (2.7) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888184 8wm6:A (2.7) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888185 8wm6:A (2.7) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888186 8wm6:A (2.7) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888187 8wm6:A (2.7) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888188 8wm6:A (2.7) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888189 8wm6:A (2.7) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888190 8wm6:A (2.7) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888191 8wm6:A (2.7) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888192 8wm6:A (2.7) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888193 8wm6:A (2.7) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888194 8wm6:A (2.7) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888195 8wm6:A (2.7) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888196 8wm6:A (2.7) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888197 8wm6:A (2.7) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888198 8wm6:A (2.7) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888199 8wm6:A (2.7) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    888200 8wm6:A (2.7) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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