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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    882001 8vqy:B (2.82) BS03 Q3G N/A N/A P14867 38898000
    882002 8vqy:C (2.82) BS01 ABU N/A N/A P47870 38898000
    882003 8vqy:C (2.82) BS02 A1ADG N/A N/A P47870 38898000
    882004 8vqy:C (2.82) BS03 Q3G N/A N/A P47870 38898000
    882005 8vqy:D (2.82) BS01 ABU N/A N/A P14867 38898000
    882006 8vqy:D (2.82) BS02 Q3G N/A N/A P14867 38898000
    882007 8vqy:D (2.82) BS03 A1ADG N/A N/A P14867 38898000
    882008 8vqy:E (2.82) BS01 MAN N/A N/A P18507 38898000
    882009 8vqy:E (2.82) BS02 MAN N/A N/A P18507 38898000
    882010 8vqy:E (2.82) BS03 A1ADG N/A N/A P18507 38898000
    882011 8vqz:A (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882012 8vqz:B (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882013 8vqz:C (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882014 8vqz:D (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882015 8vr0:A (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882016 8vr0:B (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882017 8vr0:C (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882018 8vr1:A (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882019 8vr1:B (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882020 8vr1:C (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882021 8vr1:D (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    882022 8vr2:A (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    882023 8vr2:A (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    882024 8vr2:B (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    882025 8vr2:B (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    882026 8vr2:C (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    882027 8vr2:C (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    882028 8vr2:D (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    882029 8vr2:D (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    882030 8vr3:B (2.0) BS01 A1ADI ? GO:0000271 ... Q1QD52 N/A
    882031 8vr5:A (2.2) BS01 PMP ? GO:0000271 ... Q1QD52 N/A
    882032 8vr5:A (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    882033 8vr5:B (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    882034 8vr5:B (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    882035 8vr5:C (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    882036 8vr5:C (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    882037 8vr5:D (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    882038 8vr5:D (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    882039 8vr6:A (1.9) BS01 5NG ? GO:0016740 ... Q1QD51 N/A
    882040 8vr7:A (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    882041 8vr7:A (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    882042 8vr7:B (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    882043 8vr7:B (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    882044 8vr7:B (1.9) BS03 EP1 ? GO:0016740 ... Q1QD51 N/A
    882045 8vr7:B (1.9) BS04 PAP ? GO:0016740 ... Q1QD51 N/A
    882046 8vr7:C (1.9) BS01 COA ? GO:0016740 ... Q1QD51 N/A
    882047 8vr7:C (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    882048 8vr7:D (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    882049 8vr7:D (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    882050 8vr7:E (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    882051 8vr7:E (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    882052 8vr7:E (1.9) BS03 PAP ? GO:0016740 ... Q1QD51 N/A
    882053 8vr7:F (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    882054 8vr7:F (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    882055 8vr9:A (3.06) BS01 peptide N/A N/A P04439 38781214
    882056 8vr9:A (3.06) BS02 MOV N/A N/A P04439 38781214
    882057 8vr9:D (3.06) BS01 MOV N/A N/A N/A 38781214
    882058 8vr9:E (3.06) BS01 MOV N/A N/A N/A 38781214
    882059 8vra:A (3.12) BS01 peptide N/A N/A P04439 38781214
    882060 8vra:A (3.12) BS02 MOV N/A N/A P04439 38781214
    882061 8vra:D (3.12) BS01 MOV N/A N/A N/A 38781214
    882062 8vra:E (3.12) BS01 MOV N/A N/A N/A 38781214
    882063 8vrb:A (3.25) BS01 peptide N/A N/A A0A3G8GE10 38781214
    882064 8vrb:D (3.25) BS01 MOV N/A N/A N/A 38781214
    882065 8vrb:E (3.25) BS01 MOV N/A N/A N/A 38781214
    882066 8vre:A (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    882067 8vre:A (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    882068 8vre:A (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    882069 8vre:B (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    882070 8vre:B (1.83) BS02 NAI N/A GO:0004735 ... P32322 39133178
    882071 8vre:B (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    882072 8vre:C (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    882073 8vre:C (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    882074 8vre:C (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    882075 8vre:D (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    882076 8vre:D (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    882077 8vre:E (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    882078 8vrn:A (2.57) BS01 ABU N/A N/A P47870 38898000
    882079 8vrn:A (2.57) BS02 A1ADN N/A N/A P47870 38898000
    882080 8vrn:B (2.57) BS01 ABU N/A N/A P14867 38898000
    882081 8vrn:B (2.57) BS02 A1ADN N/A N/A P14867 38898000
    882082 8vrn:B (2.57) BS03 Q3G N/A N/A P14867 38898000
    882083 8vrn:C (2.57) BS01 ABU N/A N/A P47870 38898000
    882084 8vrn:C (2.57) BS02 A1ADN N/A N/A P47870 38898000
    882085 8vrn:C (2.57) BS03 Q3G N/A N/A P47870 38898000
    882086 8vrn:D (2.57) BS01 MAN N/A N/A P14867 38898000
    882087 8vrn:D (2.57) BS02 ABU N/A N/A P14867 38898000
    882088 8vrn:D (2.57) BS03 A1ADN N/A N/A P14867 38898000
    882089 8vrn:D (2.57) BS04 Q3G N/A N/A P14867 38898000
    882090 8vrn:E (2.57) BS01 MAN N/A N/A P18507 38898000
    882091 8vrn:E (2.57) BS02 MAN N/A N/A P18507 38898000
    882092 8vrv:A (1.61) BS01 FUC N/A N/A A0A168DBN0 N/A
    882093 8vrx:B (2.04) BS01 MG N/A N/A N/A N/A
    882094 8vs6:A (2.73) BS01 peptide N/A N/A P06756 N/A
    882095 8vs6:A (2.73) BS02 CA N/A N/A P06756 N/A
    882096 8vs6:A (2.73) BS03 CA N/A N/A P06756 N/A
    882097 8vs6:A (2.73) BS04 CA N/A N/A P06756 N/A
    882098 8vs6:A (2.73) BS05 CA N/A N/A P06756 N/A
    882099 8vs6:B (2.73) BS01 peptide N/A N/A P26012 N/A
    882100 8vs6:B (2.73) BS02 CA N/A N/A P26012 N/A
    882101 8vs6:B (2.73) BS03 MG N/A N/A P26012 N/A
    882102 8vs9:L02 (3.9) BS01 rna ? GO:0000027 ... P60422 38500588
    882103 8vs9:L03 (3.9) BS01 rna ? GO:0000027 ... P60438 38500588
    882104 8vs9:L04 (3.9) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    882105 8vs9:L05 (3.9) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    882106 8vs9:L05 (3.9) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    882107 8vs9:L05 (3.9) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    882108 8vs9:L06 (3.9) BS01 rna ? GO:0002181 ... C3SR17 38500588
    882109 8vs9:L09 (3.9) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    882110 8vs9:L1 (3.9) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    882111 8vs9:L1 (3.9) BS02 rna ? GO:0000049 ... B7MIX0 38500588
    882112 8vs9:L10 (3.9) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    882113 8vs9:L11 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    882114 8vs9:L13 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882115 8vs9:L14 (3.9) BS01 rna ? GO:0003735 ... S1NW45 38500588
    882116 8vs9:L14 (3.9) BS02 rna ? GO:0003735 ... S1NW45 38500588
    882117 8vs9:L15 (3.9) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    882118 8vs9:L16 (3.9) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    882119 8vs9:L16 (3.9) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    882120 8vs9:L16 (3.9) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    882121 8vs9:L17 (3.9) BS01 rna ? GO:0003735 ... C3SR72 38500588
    882122 8vs9:L18 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882123 8vs9:L18 (3.9) BS02 rna N/A GO:0003735 ... N/A 38500588
    882124 8vs9:L19 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882125 8vs9:L19 (3.9) BS02 rna N/A GO:0003735 ... N/A 38500588
    882126 8vs9:L20 (3.9) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    882127 8vs9:L21 (3.9) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    882128 8vs9:L22 (3.9) BS01 rna ? GO:0002181 ... P61175 38500588
    882129 8vs9:L23 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882130 8vs9:L24 (3.9) BS01 rna N/A GO:0003723 ... N/A 38500588
    882131 8vs9:L25 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882132 8vs9:L25 (3.9) BS02 rna N/A GO:0003735 ... N/A 38500588
    882133 8vs9:L27 (3.9) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    882134 8vs9:L27 (3.9) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    882135 8vs9:L28 (3.9) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    882136 8vs9:L29 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882137 8vs9:L30 (3.9) BS01 rna ? GO:0003735 ... C3SR32 38500588
    882138 8vs9:L30 (3.9) BS02 rna ? GO:0003735 ... C3SR32 38500588
    882139 8vs9:L31 (3.9) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    882140 8vs9:L32 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882141 8vs9:L33 (3.9) BS01 rna ? GO:0003735 ... C3SME7 38500588
    882142 8vs9:L34 (3.9) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    882143 8vs9:L35 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    882144 8vs9:L36 (3.9) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    882145 8vs9:S02 (3.9) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    882146 8vs9:S02 (3.9) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    882147 8vs9:S03 (3.9) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    882148 8vs9:S03 (3.9) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    882149 8vs9:S04 (3.9) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    882150 8vs9:S05 (3.9) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    882151 8vs9:S05 (3.9) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    882152 8vs9:S06 (3.9) BS01 rna ? GO:0002181 ... P02358 38500588
    882153 8vs9:S07 (3.9) BS01 rna ? GO:0000028 ... P02359 38500588
    882154 8vs9:S07 (3.9) BS02 rna ? GO:0000028 ... P02359 38500588
    882155 8vs9:S08 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    882156 8vs9:S09 (3.9) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    882157 8vs9:S10 (3.9) BS01 rna N/A GO:0003723 ... N/A 38500588
    882158 8vs9:S11 (3.9) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    882159 8vs9:S12 (3.9) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    882160 8vs9:S13 (3.9) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    882161 8vs9:S13 (3.9) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    882162 8vs9:S14 (3.9) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    882163 8vs9:S15 (3.9) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    882164 8vs9:S15 (3.9) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    882165 8vs9:S16 (3.9) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    882166 8vs9:S17 (3.9) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    882167 8vs9:S18 (3.9) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    882168 8vs9:S19 (3.9) BS01 rna N/A GO:0003723 ... N/A 38500588
    882169 8vs9:S19 (3.9) BS02 rna N/A GO:0003723 ... N/A 38500588
    882170 8vs9:S20 (3.9) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    882171 8vs9:S21 (3.9) BS01 rna ? GO:0003735 ... A0A0E2L2J1 38500588
    882172 8vs9:SMPB (3.9) BS01 rna ? GO:0003723 ... A0A2X1N680 38500588
    882173 8vs9:SMPB (3.9) BS02 rna ? GO:0003723 ... A0A2X1N680 38500588
    882174 8vs9:SMPB (3.9) BS03 rna ? GO:0003723 ... A0A2X1N680 38500588
    882175 8vs9:SMPB (3.9) BS04 rna ? GO:0003723 ... A0A2X1N680 38500588
    882176 8vsa:L02 (3.7) BS01 rna ? GO:0000027 ... P60422 38500588
    882177 8vsa:L02 (3.7) BS02 rna ? GO:0000027 ... P60422 38500588
    882178 8vsa:L03 (3.7) BS01 rna ? GO:0000027 ... P60438 38500588
    882179 8vsa:L04 (3.7) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    882180 8vsa:L05 (3.7) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    882181 8vsa:L05 (3.7) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    882182 8vsa:L05 (3.7) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    882183 8vsa:L06 (3.7) BS01 rna ? GO:0002181 ... C3SR17 38500588
    882184 8vsa:L09 (3.7) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    882185 8vsa:L1 (3.7) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    882186 8vsa:L10 (3.7) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    882187 8vsa:L11 (3.7) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    882188 8vsa:L13 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882189 8vsa:L14 (3.7) BS01 rna ? GO:0003735 ... S1NW45 38500588
    882190 8vsa:L14 (3.7) BS02 rna ? GO:0003735 ... S1NW45 38500588
    882191 8vsa:L15 (3.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    882192 8vsa:L16 (3.7) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    882193 8vsa:L16 (3.7) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    882194 8vsa:L16 (3.7) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    882195 8vsa:L17 (3.7) BS01 rna ? GO:0003735 ... C3SR72 38500588
    882196 8vsa:L18 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882197 8vsa:L18 (3.7) BS02 rna N/A GO:0003735 ... N/A 38500588
    882198 8vsa:L19 (3.7) BS01 rna N/A GO:0003735 ... N/A 38500588
    882199 8vsa:L19 (3.7) BS02 rna N/A GO:0003735 ... N/A 38500588
    882200 8vsa:L20 (3.7) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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