Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4399 4400 4401 4402 4403 4404 4405 4406 4407 4408 4409 4410 4411 4412 4413 4414 4415 4416 4417 4418 4419 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    881601 8vms:A (1.42) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881602 8vms:A (1.42) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881603 8vms:A (1.42) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881604 8vms:B (1.42) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881605 8vms:B (1.42) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881606 8vms:B (1.42) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881607 8vms:B (1.42) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881608 8vmt:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881609 8vmt:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881610 8vmt:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881611 8vmt:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881612 8vmt:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881613 8vmt:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881614 8vmt:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881615 8vmt:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881616 8vmu:A (1.52) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881617 8vmu:A (1.52) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881618 8vmu:A (1.52) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881619 8vmu:A (1.52) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881620 8vmu:B (1.52) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881621 8vmu:B (1.52) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881622 8vmu:B (1.52) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881623 8vmu:B (1.52) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881624 8vmv:A (1.59) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881625 8vmv:A (1.59) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881626 8vmv:A (1.59) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881627 8vmv:A (1.59) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881628 8vmv:A (1.59) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881629 8vmv:B (1.59) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881630 8vmv:B (1.59) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881631 8vmv:B (1.59) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881632 8vmv:B (1.59) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881633 8vmv:B (1.59) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881634 8vmw:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881635 8vmw:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881636 8vmw:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881637 8vmw:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881638 8vmw:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881639 8vmw:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881640 8vmw:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881641 8vmw:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881642 8vmx:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881643 8vmx:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881644 8vmx:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881645 8vmx:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881646 8vmx:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881647 8vmx:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881648 8vmx:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881649 8vmx:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881650 8vmy:A (1.53) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881651 8vmy:A (1.53) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881652 8vmy:A (1.53) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881653 8vmy:A (1.53) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881654 8vmy:B (1.53) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881655 8vmy:B (1.53) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881656 8vmy:B (1.53) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881657 8vmy:B (1.53) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881658 8vmz:A (1.57) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881659 8vmz:A (1.57) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881660 8vmz:A (1.57) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881661 8vmz:A (1.57) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881662 8vmz:B (1.57) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881663 8vmz:B (1.57) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881664 8vmz:B (1.57) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881665 8vmz:B (1.57) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881666 8vn0:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881667 8vn0:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881668 8vn0:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881669 8vn0:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881670 8vn0:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881671 8vn0:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881672 8vn0:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881673 8vn0:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881674 8vn1:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881675 8vn1:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881676 8vn1:A (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881677 8vn1:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881678 8vn1:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881679 8vn1:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881680 8vn1:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881681 8vn1:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881682 8vn2:A (1.63) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881683 8vn2:A (1.63) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881684 8vn2:A (1.63) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881685 8vn2:A (1.63) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881686 8vn2:B (1.63) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881687 8vn2:B (1.63) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881688 8vn2:B (1.63) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881689 8vn2:B (1.63) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881690 8vn3:A (1.63) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881691 8vn3:A (1.63) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881692 8vn3:A (1.63) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881693 8vn3:A (1.63) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881694 8vn3:A (1.63) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881695 8vn3:B (1.63) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881696 8vn3:B (1.63) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881697 8vn3:B (1.63) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881698 8vn3:B (1.63) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881699 8vn3:B (1.63) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881700 8vn4:A (1.75) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881701 8vn4:A (1.75) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881702 8vn4:A (1.75) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881703 8vn4:A (1.75) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881704 8vn4:A (1.75) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881705 8vn4:B (1.75) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881706 8vn4:B (1.75) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881707 8vn4:B (1.75) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881708 8vn4:B (1.75) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881709 8vn5:A (1.65) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881710 8vn5:A (1.65) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881711 8vn5:A (1.65) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881712 8vn5:A (1.65) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881713 8vn5:B (1.65) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881714 8vn5:B (1.65) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881715 8vn5:B (1.65) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881716 8vn5:B (1.65) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881717 8vn6:A (1.54) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881718 8vn6:A (1.54) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881719 8vn6:A (1.54) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881720 8vn6:A (1.54) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881721 8vn6:B (1.54) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881722 8vn6:B (1.54) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881723 8vn6:B (1.54) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881724 8vn6:B (1.54) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881725 8vn7:A (1.67) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881726 8vn7:A (1.67) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881727 8vn7:A (1.67) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881728 8vn7:A (1.67) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881729 8vn7:A (1.67) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881730 8vn7:B (1.67) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881731 8vn7:B (1.67) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881732 8vn7:B (1.67) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881733 8vn7:B (1.67) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881734 8vn7:B (1.67) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881735 8vn8:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881736 8vn8:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881737 8vn8:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881738 8vn8:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881739 8vn8:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881740 8vn8:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881741 8vn8:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881742 8vn8:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881743 8vn9:A (1.69) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881744 8vn9:A (1.69) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881745 8vn9:A (1.69) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881746 8vn9:A (1.69) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881747 8vn9:B (1.69) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881748 8vn9:B (1.69) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881749 8vn9:B (1.69) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881750 8vn9:B (1.69) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881751 8vna:A (1.54) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881752 8vna:A (1.54) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881753 8vna:A (1.54) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881754 8vna:A (1.54) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881755 8vna:B (1.54) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881756 8vna:B (1.54) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881757 8vna:B (1.54) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881758 8vna:B (1.54) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881759 8vnb:A (1.72) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881760 8vnb:A (1.72) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881761 8vnb:A (1.72) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881762 8vnb:A (1.72) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881763 8vnb:A (1.72) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881764 8vnb:B (1.72) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881765 8vnb:B (1.72) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881766 8vnb:B (1.72) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881767 8vnb:B (1.72) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881768 8vnb:B (1.72) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881769 8vnc:A (1.62) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881770 8vnc:A (1.62) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881771 8vnc:A (1.62) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881772 8vnc:A (1.62) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881773 8vnc:A (1.62) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881774 8vnc:B (1.62) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881775 8vnc:B (1.62) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881776 8vnc:B (1.62) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881777 8vnc:B (1.62) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881778 8vnd:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881779 8vnd:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881780 8vnd:A (1.6) BS03 dna N/A GO:0004519 ... Q94702 N/A
    881781 8vnd:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881782 8vnd:A (1.6) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    881783 8vnd:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881784 8vnd:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881785 8vnd:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881786 8vnd:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881787 8vne:A (1.57) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881788 8vne:A (1.57) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881789 8vne:A (1.57) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881790 8vne:A (1.57) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881791 8vne:B (1.57) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881792 8vne:B (1.57) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881793 8vne:B (1.57) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881794 8vne:B (1.57) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881795 8vnf:A (1.5) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881796 8vnf:A (1.5) BS02 dna N/A GO:0004519 ... Q94702 N/A
    881797 8vnf:A (1.5) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    881798 8vnf:A (1.5) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    881799 8vnf:B (1.5) BS01 dna N/A GO:0004519 ... Q94702 N/A
    881800 8vnf:B (1.5) BS02 dna N/A GO:0004519 ... Q94702 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218