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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    880001 8v82:E (2.61) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880002 8v82:E (2.61) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880003 8v82:E (2.61) BS04 CA ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880004 8v82:E (2.61) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880005 8v82:E (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880006 8v83:8 (2.53) BS01 rna ? GO:0003674 ... P36080 38632236
    880007 8v83:A (2.53) BS01 rna ? GO:0000027 ... Q08235 38632236
    880008 8v83:B (2.53) BS01 rna ? GO:0000027 ... P14126 38632236
    880009 8v83:C (2.53) BS01 rna ? GO:0002181 ... P10664 38632236
    880010 8v83:C (2.53) BS02 rna ? GO:0002181 ... P10664 38632236
    880011 8v83:D (2.53) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    880012 8v83:E (2.53) BS01 rna ? GO:0000027 ... Q02326 38632236
    880013 8v83:F (2.53) BS01 rna ? GO:0000463 ... P05737 38632236
    880014 8v83:G (2.53) BS01 rna ? GO:0000470 ... P17076 38632236
    880015 8v83:G (2.53) BS02 rna ? GO:0000470 ... P17076 38632236
    880016 8v83:H (2.53) BS01 rna ? GO:0002181 ... P05738 38632236
    880017 8v83:I (2.53) BS01 rna ? GO:0003674 ... P53136 38632236
    880018 8v83:J (2.53) BS01 rna ? GO:0000280 ... P36049 38632236
    880019 8v83:K (2.53) BS01 rna ? GO:0000462 ... P38779 38632236
    880020 8v83:L (2.53) BS01 rna ? GO:0002181 ... Q12690 38632236
    880021 8v83:L (2.53) BS02 rna ? GO:0002181 ... Q12690 38632236
    880022 8v83:M (2.53) BS01 rna ? GO:0000027 ... P36105 38632236
    880023 8v83:N (2.53) BS01 rna ? GO:0002181 ... P05748 38632236
    880024 8v83:N (2.53) BS02 rna ? GO:0002181 ... P05748 38632236
    880025 8v83:O (2.53) BS01 rna ? GO:0000470 ... P26784 38632236
    880026 8v83:P (2.53) BS01 rna ? GO:0000448 ... P05740 38632236
    880027 8v83:P (2.53) BS02 rna ? GO:0000448 ... P05740 38632236
    880028 8v83:Q (2.53) BS01 rna ? GO:0002181 ... P0CX49 38632236
    880029 8v83:R (2.53) BS01 rna ? GO:0000460 ... P10962 38632236
    880030 8v83:S (2.53) BS01 rna ? GO:0002181 ... P0CX23 38632236
    880031 8v83:V (2.53) BS01 rna ? GO:0002181 ... P0CX41 38632236
    880032 8v83:W (2.53) BS01 rna ? GO:0000027 ... P33201 38632236
    880033 8v83:Y (2.53) BS01 rna ? GO:0002181 ... P05743 38632236
    880034 8v83:Y (2.53) BS02 rna ? GO:0002181 ... P05743 38632236
    880035 8v83:Z (2.53) BS01 rna ? GO:0000027 ... P38789 38632236
    880036 8v83:a (2.53) BS01 rna ? GO:0000055 ... P0CX43 38632236
    880037 8v83:b (2.53) BS01 rna ? GO:0000054 ... Q02892 38632236
    880038 8v83:e (2.53) BS01 rna ? GO:0002181 ... P38061 38632236
    880039 8v83:f (2.53) BS01 rna ? GO:0000027 ... P05744 38632236
    880040 8v83:h (2.53) BS01 rna ? GO:0000463 ... P0CX84 38632236
    880041 8v83:h (2.53) BS02 rna ? GO:0000463 ... P0CX84 38632236
    880042 8v83:i (2.53) BS01 rna ? GO:0002181 ... P05745 38632236
    880043 8v83:j (2.53) BS01 rna ? GO:0000448 ... P49166 38632236
    880044 8v83:j (2.53) BS02 rna ? GO:0000448 ... P49166 38632236
    880045 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    880046 8v83:l (2.53) BS01 rna ? GO:0000463 ... Q08962 38632236
    880047 8v83:l (2.53) BS02 peptide ? GO:0000463 ... Q08962 38632236
    880048 8v83:m (2.53) BS01 rna ? GO:0000463 ... Q04660 38632236
    880049 8v83:n (2.53) BS01 rna ? GO:0000462 ... P53261 38632236
    880050 8v83:n (2.53) BS02 rna ? GO:0000462 ... P53261 38632236
    880051 8v83:o (2.53) BS01 rna ? GO:0000463 ... P53927 38632236
    880052 8v83:q (2.53) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    880053 8v83:r (2.53) BS01 rna ? GO:0000460 ... P40078 38632236
    880054 8v83:t (2.53) BS01 rna ? GO:0000463 ... P40693 38632236
    880055 8v83:t (2.53) BS02 rna ? GO:0000463 ... P40693 38632236
    880056 8v83:u (2.53) BS01 rna ? GO:0001671 ... Q07915 38632236
    880057 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    880058 8v83:v (2.53) BS01 rna ? GO:0003674 ... P40007 38632236
    880059 8v83:v (2.53) BS02 rna ? GO:0003674 ... P40007 38632236
    880060 8v83:w (2.53) BS01 rna ? GO:0003674 ... P35178 38632236
    880061 8v83:x (2.53) BS01 rna ? GO:0000055 ... P38805 38632236
    880062 8v83:y (2.53) BS01 rna ? GO:0000054 ... Q12522 38632236
    880063 8v84:3 (2.7) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    880064 8v84:8 (2.7) BS01 rna ? GO:0003674 ... P36080 38632236
    880065 8v84:A (2.7) BS01 rna ? GO:0000027 ... Q08235 38632236
    880066 8v84:B (2.7) BS01 rna ? GO:0000027 ... P14126 38632236
    880067 8v84:C (2.7) BS01 rna ? GO:0002181 ... P10664 38632236
    880068 8v84:C (2.7) BS02 rna ? GO:0002181 ... P10664 38632236
    880069 8v84:D (2.7) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    880070 8v84:E (2.7) BS01 rna ? GO:0000027 ... Q02326 38632236
    880071 8v84:F (2.7) BS01 rna ? GO:0000463 ... P05737 38632236
    880072 8v84:G (2.7) BS01 rna ? GO:0000470 ... P17076 38632236
    880073 8v84:G (2.7) BS02 rna ? GO:0000470 ... P17076 38632236
    880074 8v84:G (2.7) BS03 rna ? GO:0000470 ... P17076 38632236
    880075 8v84:H (2.7) BS01 rna ? GO:0002181 ... P05738 38632236
    880076 8v84:I (2.7) BS01 rna ? GO:0003674 ... P53136 38632236
    880077 8v84:J (2.7) BS01 rna ? GO:0000280 ... P36049 38632236
    880078 8v84:K (2.7) BS01 rna ? GO:0000462 ... P38779 38632236
    880079 8v84:L (2.7) BS01 rna ? GO:0002181 ... Q12690 38632236
    880080 8v84:L (2.7) BS02 rna ? GO:0002181 ... Q12690 38632236
    880081 8v84:M (2.7) BS01 rna ? GO:0000027 ... P36105 38632236
    880082 8v84:N (2.7) BS01 rna ? GO:0002181 ... P05748 38632236
    880083 8v84:N (2.7) BS02 rna ? GO:0002181 ... P05748 38632236
    880084 8v84:O (2.7) BS01 rna ? GO:0000470 ... P26784 38632236
    880085 8v84:P (2.7) BS01 rna ? GO:0000448 ... P05740 38632236
    880086 8v84:P (2.7) BS02 rna ? GO:0000448 ... P05740 38632236
    880087 8v84:Q (2.7) BS01 rna ? GO:0002181 ... P0CX49 38632236
    880088 8v84:R (2.7) BS01 rna ? GO:0000460 ... P10962 38632236
    880089 8v84:S (2.7) BS01 rna ? GO:0002181 ... P0CX23 38632236
    880090 8v84:V (2.7) BS01 rna ? GO:0002181 ... P0CX41 38632236
    880091 8v84:W (2.7) BS01 rna ? GO:0000027 ... P33201 38632236
    880092 8v84:Y (2.7) BS01 rna ? GO:0002181 ... P05743 38632236
    880093 8v84:Y (2.7) BS02 rna ? GO:0002181 ... P05743 38632236
    880094 8v84:Z (2.7) BS01 rna ? GO:0000027 ... P38789 38632236
    880095 8v84:a (2.7) BS01 rna ? GO:0000055 ... P0CX43 38632236
    880096 8v84:b (2.7) BS01 rna ? GO:0000054 ... Q02892 38632236
    880097 8v84:b (2.7) BS02 GDP ? GO:0000054 ... Q02892 38632236
    880098 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    880099 8v84:e (2.7) BS01 rna ? GO:0002181 ... P38061 38632236
    880100 8v84:f (2.7) BS01 rna ? GO:0000027 ... P05744 38632236
    880101 8v84:h (2.7) BS01 rna ? GO:0000463 ... P0CX84 38632236
    880102 8v84:h (2.7) BS02 rna ? GO:0000463 ... P0CX84 38632236
    880103 8v84:i (2.7) BS01 rna ? GO:0002181 ... P05745 38632236
    880104 8v84:j (2.7) BS01 rna ? GO:0000448 ... P49166 38632236
    880105 8v84:j (2.7) BS02 rna ? GO:0000448 ... P49166 38632236
    880106 8v84:j (2.7) BS03 ZN ? GO:0000448 ... P49166 38632236
    880107 8v84:l (2.7) BS01 rna ? GO:0000463 ... Q08962 38632236
    880108 8v84:m (2.7) BS01 rna ? GO:0000463 ... Q04660 38632236
    880109 8v84:n (2.7) BS01 rna ? GO:0000462 ... P53261 38632236
    880110 8v84:n (2.7) BS02 rna ? GO:0000462 ... P53261 38632236
    880111 8v84:o (2.7) BS01 rna ? GO:0000463 ... P53927 38632236
    880112 8v84:q (2.7) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    880113 8v84:r (2.7) BS01 rna ? GO:0000460 ... P40078 38632236
    880114 8v84:t (2.7) BS01 rna ? GO:0000463 ... P40693 38632236
    880115 8v84:t (2.7) BS02 rna ? GO:0000463 ... P40693 38632236
    880116 8v84:u (2.7) BS01 rna ? GO:0001671 ... Q07915 38632236
    880117 8v84:u (2.7) BS02 ZN ? GO:0001671 ... Q07915 38632236
    880118 8v84:v (2.7) BS01 rna ? GO:0003674 ... P40007 38632236
    880119 8v84:v (2.7) BS02 rna ? GO:0003674 ... P40007 38632236
    880120 8v84:w (2.7) BS01 rna ? GO:0003674 ... P35178 38632236
    880121 8v84:x (2.7) BS01 rna ? GO:0000055 ... P38805 38632236
    880122 8v84:y (2.7) BS01 rna ? GO:0000054 ... Q12522 38632236
    880123 8v86:A (2.47) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880124 8v86:A (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880125 8v86:A (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880126 8v86:B (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880127 8v86:B (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880128 8v86:B (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880129 8v86:C (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880130 8v86:C (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880131 8v86:C (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880132 8v86:D (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880133 8v86:D (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880134 8v86:D (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880135 8v86:E (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880136 8v86:E (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880137 8v86:E (2.47) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544    		 38382524
    880138 8v87:3 (2.66) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    880139 8v87:3 (2.66) BS02 ADP 3.6.4.13 GO:0000463 ... Q12389 38632236
    880140 8v87:7 (2.66) BS01 rna ? GO:0000055 ... P43586 38632236
    880141 8v87:8 (2.66) BS01 rna ? GO:0003729 ... P39744 38632236
    880142 8v87:A (2.66) BS01 rna ? GO:0000027 ... Q08235 38632236
    880143 8v87:B (2.66) BS01 rna ? GO:0000027 ... P14126 38632236
    880144 8v87:C (2.66) BS01 rna ? GO:0002181 ... P10664 38632236
    880145 8v87:C (2.66) BS02 rna ? GO:0002181 ... P10664 38632236
    880146 8v87:D (2.66) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    880147 8v87:E (2.66) BS01 rna ? GO:0000027 ... Q02326 38632236
    880148 8v87:F (2.66) BS01 rna ? GO:0000463 ... P05737 38632236
    880149 8v87:G (2.66) BS01 rna ? GO:0000470 ... P17076 38632236
    880150 8v87:G (2.66) BS02 rna ? GO:0000470 ... P17076 38632236
    880151 8v87:G (2.66) BS03 rna ? GO:0000470 ... P17076 38632236
    880152 8v87:H (2.66) BS01 rna ? GO:0002181 ... P05738 38632236
    880153 8v87:I (2.66) BS01 rna ? GO:0003682 ... Q07896 38632236
    880154 8v87:J (2.66) BS01 rna ? GO:0000280 ... P36049 38632236
    880155 8v87:K (2.66) BS01 rna ? GO:0000462 ... P38779 38632236
    880156 8v87:L (2.66) BS01 rna ? GO:0002181 ... Q12690 38632236
    880157 8v87:L (2.66) BS02 rna ? GO:0002181 ... Q12690 38632236
    880158 8v87:M (2.66) BS01 rna ? GO:0000027 ... P36105 38632236
    880159 8v87:N (2.66) BS01 rna ? GO:0002181 ... P05748 38632236
    880160 8v87:N (2.66) BS02 rna ? GO:0002181 ... P05748 38632236
    880161 8v87:O (2.66) BS01 rna ? GO:0000470 ... P26784 38632236
    880162 8v87:P (2.66) BS01 rna ? GO:0000448 ... P05740 38632236
    880163 8v87:P (2.66) BS02 rna ? GO:0000448 ... P05740 38632236
    880164 8v87:Q (2.66) BS01 rna ? GO:0002181 ... P0CX49 38632236
    880165 8v87:R (2.66) BS01 rna ? GO:0002181 ... P0CX82 38632236
    880166 8v87:S (2.66) BS01 rna ? GO:0002181 ... P0CX23 38632236
    880167 8v87:U (2.66) BS01 rna ? GO:0002181 ... P05749 38632236
    880168 8v87:V (2.66) BS01 rna ? GO:0002181 ... P0CX41 38632236
    880169 8v87:W (2.66) BS01 rna ? GO:0000027 ... P33201 38632236
    880170 8v87:X (2.66) BS01 rna ? GO:0000027 ... P04456 38632236
    880171 8v87:X (2.66) BS02 rna ? GO:0000027 ... P04456 38632236
    880172 8v87:Y (2.66) BS01 rna ? GO:0002181 ... P05743 38632236
    880173 8v87:Y (2.66) BS02 rna ? GO:0002181 ... P05743 38632236
    880174 8v87:Z (2.66) BS01 rna ? GO:0002181 ... P0C2H6 38632236
    880175 8v87:a (2.66) BS01 rna ? GO:0000055 ... P0CX43 38632236
    880176 8v87:b (2.66) BS01 rna ? GO:0000054 ... Q02892 38632236
    880177 8v87:b (2.66) BS02 GDP ? GO:0000054 ... Q02892 38632236
    880178 8v87:c (2.66) BS01 rna ? GO:0002181 ... P14120 38632236
    880179 8v87:d (2.66) BS01 rna ? GO:0002181 ... P0C2H8 38632236
    880180 8v87:e (2.66) BS01 rna ? GO:0002181 ... P38061 38632236
    880181 8v87:f (2.66) BS01 rna ? GO:0000027 ... P05744 38632236
    880182 8v87:g (2.66) BS01 rna ? GO:0002181 ... P87262 38632236
    880183 8v87:g (2.66) BS02 ZN ? GO:0002181 ... P87262 38632236
    880184 8v87:h (2.66) BS01 rna ? GO:0000463 ... P0CX84 38632236
    880185 8v87:h (2.66) BS02 rna ? GO:0000463 ... P0CX84 38632236
    880186 8v87:i (2.66) BS01 rna ? GO:0002181 ... P05745 38632236
    880187 8v87:j (2.66) BS01 rna ? GO:0000448 ... P49166 38632236
    880188 8v87:j (2.66) BS02 rna ? GO:0000448 ... P49166 38632236
    880189 8v87:j (2.66) BS03 ZN ? GO:0000448 ... P49166 38632236
    880190 8v87:k (2.66) BS01 rna ? GO:0002181 ... P49167 38632236
    880191 8v87:l (2.66) BS01 rna ? GO:0000463 ... Q08962 38632236
    880192 8v87:m (2.66) BS01 rna ? GO:0000463 ... Q04660 38632236
    880193 8v87:m (2.66) BS02 rna ? GO:0000463 ... Q04660 38632236
    880194 8v87:n (2.66) BS01 rna ? GO:0000462 ... P53261 38632236
    880195 8v87:n (2.66) BS02 rna ? GO:0000462 ... P53261 38632236
    880196 8v87:o (2.66) BS01 rna ? GO:0000463 ... P53927 38632236
    880197 8v87:q (2.66) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    880198 8v87:r (2.66) BS01 rna ? GO:0000460 ... P40078 38632236
    880199 8v87:s (2.66) BS01 rna ? GO:0000055 ... P40010 38632236
    880200 8v87:t (2.66) BS01 rna ? GO:0000463 ... P40693 38632236
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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