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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    879801 8v6j:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    879802 8v6j:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    879803 8v6j:C (11.11) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    879804 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    879805 8v6j:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    879806 8v6l:A (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879807 8v6l:B (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879808 8v6l:C (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879809 8v6l:D (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879810 8v6m:A (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879811 8v6m:B (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879812 8v6m:C (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879813 8v6m:D (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    879814 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    879815 8v6n:A (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879816 8v6n:A (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879817 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    879818 8v6n:B (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879819 8v6n:B (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879820 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    879821 8v6n:C (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879822 8v6n:C (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879823 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    879824 8v6n:D (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879825 8v6n:D (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879826 8v6o:A (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879827 8v6o:A (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879828 8v6o:B (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879829 8v6o:B (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879830 8v6o:C (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879831 8v6o:C (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879832 8v6o:D (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879833 8v6o:D (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    879834 8v6p:A (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 N/A
    879835 8v6p:B (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 N/A
    879836 8v6p:C (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 N/A
    879837 8v6p:D (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 N/A
    879838 8v6r:A (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    879839 8v6r:B (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    879840 8v6s:A (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    879841 8v6s:B (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    879842 8v6u:A (3.0) BS01 YEQ ? N/A P28223 38753765
    879843 8v6v:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    879844 8v6v:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    879845 8v6v:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    879846 8v6v:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    879847 8v6v:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    879848 8v6v:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    879849 8v6v:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    879850 8v6v:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    879851 8v6v:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    879852 8v6v:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    879853 8v6v:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    879854 8v6v:F (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    879855 8v6v:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    879856 8v6v:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    879857 8v6v:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    879858 8v6v:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    879859 8v6v:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    879860 8v6v:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    879861 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    879862 8v6v:X (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    879863 8v6v:X (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    879864 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    879865 8v7a:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879866 8v7a:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879867 8v7a:A (1.95) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879868 8v7a:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879869 8v7b:A (1.9) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879870 8v7b:A (1.9) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879871 8v7b:A (1.9) BS03 HF4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879872 8v7b:A (1.9) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879873 8v7c:A (1.79) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879874 8v7c:A (1.79) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879875 8v7c:A (1.79) BS03 GTF 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879876 8v7c:A (1.79) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879877 8v7d:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879878 8v7d:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879879 8v7d:A (1.95) BS03 CTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879880 8v7d:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879881 8v7e:A (1.82) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879882 8v7e:A (1.82) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879883 8v7e:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879884 8v7e:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879885 8v7e:A (1.82) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879886 8v7f:A (2.2) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879887 8v7f:A (2.2) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879888 8v7f:A (2.2) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879889 8v7f:A (2.2) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879890 8v7f:A (2.2) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879891 8v7g:A (1.52) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879892 8v7g:A (1.52) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879893 8v7g:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879894 8v7g:A (1.52) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879895 8v7g:A (1.52) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879896 8v7h:A (1.68) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879897 8v7h:A (1.68) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879898 8v7h:A (1.68) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879899 8v7h:A (1.68) BS04 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879900 8v7i:A (1.72) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879901 8v7i:A (1.72) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879902 8v7i:A (1.72) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879903 8v7i:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879904 8v7i:A (1.72) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879905 8v7j:A (1.66) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879906 8v7j:A (1.66) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879907 8v7j:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879908 8v7j:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879909 8v7j:A (1.66) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879910 8v7k:A (1.65) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879911 8v7k:A (1.65) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879912 8v7k:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879913 8v7k:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879914 8v7k:A (1.65) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    879915 8v7l:A (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    879916 8v7l:A (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    879917 8v7l:B (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    879918 8v7l:B (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    879919 8v7l:C (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    879920 8v7l:C (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    879921 8v7l:D (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    879922 8v7l:D (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    879923 8v7l:E (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    879924 8v7l:E (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    879925 8v7l:F (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    879926 8v7l:F (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    879927 8v7l:G (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    879928 8v7l:G (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    879929 8v7l:H (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    879930 8v7l:H (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    879931 8v7l:W (2.9) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    879932 8v7l:W (2.9) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    879933 8v7l:W (2.9) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    879934 8v7r:A (1.41) BS01 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    879935 8v7r:A (1.41) BS02 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    879936 8v7u:A (1.82) BS01 YDU 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    879937 8v7z:A (3.4) BS01 MG N/A GO:0005254 ... P13569 39107303
    879938 8v7z:A (3.4) BS02 MG N/A GO:0005254 ... P13569 39107303
    879939 8v7z:A (3.4) BS03 ATP N/A GO:0005254 ... P13569 39107303
    879940 8v7z:A (3.4) BS04 ATP N/A GO:0005254 ... P13569 39107303
    879941 8v7z:A (3.4) BS05 CLR N/A GO:0005254 ... P13569 39107303
    879942 8v80:A (2.34) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879943 8v80:A (2.34) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879944 8v80:A (2.34) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879945 8v80:A (2.34) BS04 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879946 8v80:A (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879947 8v80:A (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879948 8v80:B (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879949 8v80:B (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879950 8v80:B (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879951 8v80:B (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879952 8v80:B (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879953 8v80:B (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879954 8v80:C (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879955 8v80:C (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879956 8v80:C (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879957 8v80:C (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879958 8v80:C (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879959 8v80:C (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879960 8v80:D (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879961 8v80:D (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879962 8v80:D (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879963 8v80:D (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879964 8v80:D (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879965 8v80:D (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879966 8v80:E (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879967 8v80:E (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879968 8v80:E (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879969 8v80:E (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879970 8v80:E (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879971 8v80:E (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879972 8v81:A (3.6) BS01 ATP N/A GO:0005254 ... P13569 39107303
    879973 8v81:A (3.6) BS02 ATP N/A GO:0005254 ... P13569 39107303
    879974 8v81:A (3.6) BS03 CLR N/A GO:0005254 ... P13569 39107303
    879975 8v81:A (3.6) BS04 WG5 N/A GO:0005254 ... P13569 39107303
    879976 8v82:A (2.61) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879977 8v82:A (2.61) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879978 8v82:A (2.61) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879979 8v82:A (2.61) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879980 8v82:A (2.61) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879981 8v82:A (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879982 8v82:B (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879983 8v82:B (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879984 8v82:B (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879985 8v82:B (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879986 8v82:B (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879987 8v82:B (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879988 8v82:C (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879989 8v82:C (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879990 8v82:C (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879991 8v82:C (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879992 8v82:C (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879993 8v82:C (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879994 8v82:D (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879995 8v82:D (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879996 8v82:D (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879997 8v82:D (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879998 8v82:D (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    879999 8v82:D (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    880000 8v82:E (2.61) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218